import: now can import SILVA fasta files

2020-10-30 10:43:04 +01:00
parent 199f3772e8
commit b9b4cec5b5
3 changed files with 29 additions and 6 deletions
--- a/python/obitools3/apps/optiongroups/init.py
+++ b/python/obitools3/apps/optiongroups/init.py
@ -39,6 +39,12 @@ def __addImportInputOption(optionManager):
                     const=b'fastq',
                     help="Input file is in fastq format")

+    group.add_argument('--silva-input',
+                     action="store_const", dest="obi:inputformat",
+                     default=None,
+                     const=b'silva',
+                     help="Input file is in SILVA fasta format")
+
    group.add_argument('--embl-input',
                     action="store_const", dest="obi:inputformat",
                     default=None,