import: now can import SILVA fasta files

2020-10-30 10:43:04 +01:00
parent 199f3772e8
commit b9b4cec5b5
3 changed files with 29 additions and 6 deletions
--- a/python/obitools3/uri/decode.pyx
+++ b/python/obitools3/uri/decode.pyx
@ -464,7 +464,7 @@ def open_uri(uri,
        if format is not None:
            if seqtype==b"nuc":
                objclass = Nuc_Seq    # Nuc_Seq_Stored? TODO
-                if format==b"fasta":
+                if format==b"fasta" or format==b"silva":
                    if input:
                        iseq = fastaNucIterator(file, 
                                                skip=skip,