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ecopcr: added warnings and check of primer length (related to #75)

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This commit is contained in:
Celine Mercier
2020-04-05 18:40:56 +02:00
parent 0b98371688
commit b9f68c76c8
3 changed files with 14 additions and 5 deletions
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7
python/obitools3/commands/ecopcr.pyx
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@ -35,13 +35,13 @@ def addOptions(parser):
action="store", dest="ecopcr:primer1",
metavar='<PRIMER>',
type=str,
help="Forward primer.")
help="Forward primer, length must be less than or equal to 32")
group.add_argument('--primer2', '-R',
action="store", dest="ecopcr:primer2",
metavar='<PRIMER>',
type=str,
help="Reverse primer.")
help="Reverse primer, length must be less than or equal to 32")
group.add_argument('--error', '-e',
action="store", dest="ecopcr:error",
@ -203,6 +203,7 @@ def run(config):
#print("\n\nOutput view:\n````````````", file=sys.stderr)
#print(repr(o_dms[o_view_name]), file=sys.stderr)
o_dms.close()
i_dms.close(force=True)
o_dms.close(force=True)
logger("info", "Done.")