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obi clean: fixed an openmp bug where the share size would be 0 blocking

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the program
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Celine Mercier
2019-09-10 15:37:33 +02:00
parent f3b0e10c7f
commit bc55c5ef8c
1 changed files with 2 additions and 1 deletions
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3
src/obi_clean.c
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@ -18,6 +18,7 @@
#include <stdbool.h>
#include <search.h>
#include <sys/time.h>
#include <math.h>
#include "obi_clean.h"
#include "obidms.h"
@ -426,7 +427,7 @@ int obi_clean(const char* dms_name,
byte_t ali_result;
// Parallelize the loop on samples to avoid interdependency issues inside one sample
#pragma omp for schedule(dynamic, (sample_count/thread_count))
#pragma omp for schedule(dynamic, sample_count/thread_count + (sample_count % thread_count != 0)) // Avoid 0 which blocks the program
for (sample=0; sample < sample_count; sample++)
{
sample_count_array = complete_sample_count_array+(sample*seq_count);