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Python: embl parser: fixed a bug preventing taxids from being parsed

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Celine Mercier
2019-03-30 15:15:49 +01:00
parent 0847d618d6
commit c293cfabbb
1 changed files with 3 additions and 0 deletions
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python/obitools3/parsers/embl_genbank_features.pyx
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@ -10,6 +10,7 @@ Created on June 12th 2018
import logging import logging
import re import re
from itertools import chain from itertools import chain
from obitools3.utils cimport str2bytes
_featureMatcher = re.compile(b'^(FT| ) [^ ].+\n((FT| ) .+\n)+',re.M) _featureMatcher = re.compile(b'^(FT| ) [^ ].+\n((FT| ) .+\n)+',re.M)
@ -65,6 +66,8 @@ def qualifierIterator(qualifiers):
value = t[1].replace(b'\n',b' ') value = t[1].replace(b'\n',b' ')
try: try:
value = eval(value) value = eval(value)
if type(value) == str:
value = str2bytes(value)
except: except:
pass pass
t = (t[0],value) t = (t[0],value)