C functions to detect IUPAC sequences

2017-07-05 17:26:03 +02:00
parent 101f764cce
commit d10192ab0e
3 changed files with 92 additions and 0 deletions
--- a/python/obitools3/dms/capi/obitypes.pxd
+++ b/python/obitools3/dms/capi/obitypes.pxd
@ -12,6 +12,8 @@ cdef extern from *:

 cdef extern from "encode.h" nogil:
    bint only_ATGC(const_char_p seq)
+    bint only_IUPAC_DNA(const_char_p seq)
+    bint is_a_DNA_seq(const_char_p seq)


 cdef extern from "obitypes.h" nogil: