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Celine Mercier
2019-09-22 18:52:05 +02:00
parent 4fa38d9886
commit d30f7e7317
5 changed files with 13 additions and 23 deletions
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4
python/obitools3/apps/arguments.pyx
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@ -33,10 +33,6 @@ cpdef buildArgumentParser(str configname,
default=None, default=None,
help='Create a logfile') help='Create a logfile')
parser.add_argument('--no-progress', dest='%s:progress' % configname,
action='store_false',
default=None,
help='Do not print the progress bar during analyzes')
subparsers = parser.add_subparsers(title='subcommands', subparsers = parser.add_subparsers(title='subcommands',
description='valid subcommands', description='valid subcommands',

2
python/obitools3/apps/config.pyx
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@ -13,7 +13,7 @@ from .logging cimport getLogger
from .arguments cimport buildArgumentParser from .arguments cimport buildArgumentParser
from ..version import version from ..version import version
from _curses import version
cdef dict __default_config__ = {} cdef dict __default_config__ = {}

2
python/obitools3/version.py
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@ -1,4 +1,4 @@
major = 0 major = 1
minor = 0 minor = 0
serial= '0' serial= '0'

24
scripts/obi
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@ -1,26 +1,20 @@
#!/usr/local/bin/python3.4 #!/usr/local/bin/python3.5
''' '''
obi -- shortdesc obi -- OBITools3
obi is a description obi is a package for the management of analyses and data in DNA metabarcoding
It defines classes_and_methods @author: Celine Mercier
@author: user_name @license: CeCILL-V2
@copyright: 2014 organization_name. All rights reserved. @contact: celine.mercier@metabarcoding.org
@license: license
@contact: user_email
@deffield updated: Updated
''' '''
default_config = { 'software' : "The OBITools", default_config = { 'software' : "The OBITools 3",
'log' : False, 'log' : False,
'loglevel' : 'INFO', 'loglevel' : 'INFO',
'progress' : True,
'inputURI' : None, 'inputURI' : None,
'outputURI' : None, 'outputURI' : None,
'defaultdms' : None, 'defaultdms' : None,
@ -52,8 +46,8 @@ from obitools3.version import version
__all__ = [] __all__ = []
__version__ = version __version__ = version
__date__ = '2014-09-28' __date__ = '2019-09-22'
__updated__ = '2014-09-28' __updated__ = '2019-09-22'
DEBUG = 1 DEBUG = 1
TESTRUN = 0 TESTRUN = 0

4
setup.py
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@ -83,13 +83,13 @@ def findPackage(root,base=None):
PACKAGE = "OBITools3" PACKAGE = "OBITools3"
VERSION = "0.0.9" VERSION = "1.0.0"
AUTHOR = 'Celine Mercier' AUTHOR = 'Celine Mercier'
EMAIL = 'celine.mercier@metabarcoding.org' EMAIL = 'celine.mercier@metabarcoding.org'
URL = "http://metabarcoding.org/obitools3" URL = "http://metabarcoding.org/obitools3"
LICENSE = "CeCILL-V2" LICENSE = "CeCILL-V2"
DESCRIPTION = "Tools and library for DNA metabarcoding", DESCRIPTION = "Tools and library for DNA metabarcoding",
PYTHONMIN = '3.7' PYTHONMIN = '3.5'
SRC = 'python' SRC = 'python'
CSRC = 'src' CSRC = 'src'