more cleaning

python/obitools3/apps/arguments.pyx

@@ -33,10 +33,6 @@ cpdef buildArgumentParser(str configname,
                                        default=None, 
                         help='Create a logfile')
 
-    parser.add_argument('--no-progress', dest='%s:progress' % configname, 
-                                       action='store_false', 
-                                       default=None, 
-                        help='Do not print the progress bar during analyzes')
 
     subparsers = parser.add_subparsers(title='subcommands',
                                        description='valid subcommands',

python/obitools3/apps/config.pyx

@@ -13,7 +13,7 @@ from .logging   cimport getLogger
 from .arguments cimport buildArgumentParser
 
 from ..version import version
-from _curses import version
+
 
 cdef dict __default_config__ = {}
 

python/obitools3/version.py

@@ -1,4 +1,4 @@
-major = 0
+major = 1
 minor = 0
 serial= '0'
 

scripts/obi

@@ -1,26 +1,20 @@
-#!/usr/local/bin/python3.4
+#!/usr/local/bin/python3.5
 '''
-obi -- shortdesc
+obi -- OBITools3
 
-obi is a description
+obi is a package for the management of analyses and data in DNA metabarcoding
 
-It defines classes_and_methods
+@author:     Celine Mercier
 
-@author:     user_name
+@license:    CeCILL-V2
 
-@copyright:  2014 organization_name. All rights reserved.
-
-@license:    license
-
-@contact:    user_email
-@deffield    updated: Updated
+@contact:    celine.mercier@metabarcoding.org
 '''
 
 
-default_config = { 'software'       : "The OBITools",
+default_config = { 'software'       : "The OBITools 3",
                    'log'            : False,
                    'loglevel'       : 'INFO',
-                   'progress'       : True,
                    'inputURI'       : None,
                    'outputURI'      : None,
                    'defaultdms'     : None,
@@ -52,8 +46,8 @@ from obitools3.version import version
 
 __all__     = []
 __version__ = version
-__date__    = '2014-09-28'
-__updated__ = '2014-09-28'
+__date__    = '2019-09-22'
+__updated__ = '2019-09-22'
 
 DEBUG = 1
 TESTRUN = 0

setup.py

@@ -83,13 +83,13 @@ def findPackage(root,base=None):
   
 
 PACKAGE     = "OBITools3"
-VERSION     = "0.0.9"
+VERSION     = "1.0.0"
 AUTHOR      = 'Celine Mercier'
 EMAIL       = 'celine.mercier@metabarcoding.org'
 URL         = "http://metabarcoding.org/obitools3"
 LICENSE     = "CeCILL-V2"
 DESCRIPTION = "Tools and library for DNA metabarcoding",
-PYTHONMIN   = '3.7'
+PYTHONMIN   = '3.5'
 
 SRC       = 'python'
 CSRC      = 'src'