Cython API: when importing a file in a DMS, its length is computed

beforehand for the progress bar

python/obitools3/commands/import.pyx

@@ -87,14 +87,19 @@ def run(config):
         
     DMS.obi_atexit()
     
-    logger("info", "obi import : imports file into a DMS")
+    logger("info", "obi import: imports an object (file(s), obiview, taxonomy...) into a DMS")
+    
+    entry_count = -1
     
     if not config['obi']['taxdump']:
         input = open_uri(config['obi']['inputURI'])
         if input is None:  # TODO check for bytes instead now?
             raise Exception("Could not open input URI")
-    
-        # TODO uuuuh
+        
+        entry_count = input[4]
+        logger("info", "Importing %d entries", entry_count)
+        
+        # TODO a bit dirty
         if input[2]==Nuc_Seq:
             v = View_NUC_SEQS
         else:
@@ -117,7 +122,7 @@ def run(config):
         output[0].close()
         return
         
-    pb = ProgressBar(10000000, config, seconde=5)   # TODO should be number of records in file
+    pb = ProgressBar(entry_count, config, seconde=5)
     
     entries = input[1]
         
@@ -250,14 +255,17 @@ def run(config):
                                     
         i+=1
  
+    pb(i, force=True)
+    print("", file=sys.stderr)
+    
     # Save command config in View and DMS comments
     command_line = " ".join(sys.argv[1:])
     view.write_config(config, "import", command_line, input_str=[os.path.abspath(config['obi']['inputURI'])])
     output[0].record_command_line(command_line)
 
-    print("\n")
-    print(view.__repr__())
-  
+    #print("\n\nOutput view:\n````````````", file=sys.stderr)
+    #print(repr(view), file=sys.stderr)
+    
     try:
         input[0].close()
     except AttributeError:
@@ -267,3 +275,4 @@ def run(config):
     except AttributeError:
         pass
 
+    logger("info", "Done.")