ngsfilter and alignpairedend: paired-end reads are now correctly

reversed and labeled to be aligned correctly by alignpairedend
2019-07-23 18:56:51 +02:00
parent 1759302829
commit d99702f56f
7 changed files with 39 additions and 5 deletions
--- a/python/obitools3/dms/capi/kmer_similarity.pxd
+++ b/python/obitools3/dms/capi/kmer_similarity.pxd
@ -34,6 +34,7 @@ cdef extern from "kmer_similarity.h" nogil:
                              index_t elt_idx2,
                              OBIDMS_column_p qual_col1,
                              OBIDMS_column_p qual_col2,
+                              OBIDMS_column_p reversed_col,
                              uint8_t kmer_size,
                              int32_t** kmer_pos_array,
                              int32_t* kmer_pos_array_height_p,