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Python: added "date created" information in view representation

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This commit is contained in:
Celine Mercier
2020-07-27 17:38:45 +02:00
parent f36691053b
commit dec114eed6
2 changed files with 13 additions and 5 deletions
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6
python/obitools3/commands/test.pyx
View File

@ -23,6 +23,7 @@ from obitools3.dms.capi.obiview cimport NUC_SEQUENCE_COLUMN, \
import shutil import shutil
import string import string
import random import random
import sys
from cpython.exc cimport PyErr_CheckSignals from cpython.exc cimport PyErr_CheckSignals
@ -366,7 +367,7 @@ def random_new_view(config, infos, first=False):
infos['view'] = View_NUC_SEQS.new(infos['dms'], random_unique_name(infos), comments=random_comments(config)) # TODO quality column infos['view'] = View_NUC_SEQS.new(infos['dms'], random_unique_name(infos), comments=random_comments(config)) # TODO quality column
else : else :
infos['view'] = View.new(infos['dms'], random_unique_name(infos), comments=random_comments(config)) # TODO quality column infos['view'] = View.new(infos['dms'], random_unique_name(infos), comments=random_comments(config)) # TODO quality column
infos['view'].write_config(config, "test", infos["command_line"], input_dms_name=[infos['dms'].name], input_view_name=["random"])
print_test(config, repr(infos['view'])) print_test(config, repr(infos['view']))
if v_to_clone is not None : if v_to_clone is not None :
if line_selection is None: if line_selection is None:
@ -497,7 +498,8 @@ def run(config):
(b"OBI_SEQ", False): random_seq, (b"OBI_SEQ", True): random_seq_tuples, (b"OBI_SEQ", False): random_seq, (b"OBI_SEQ", True): random_seq_tuples,
(b"OBI_STR", False): random_bytes, (b"OBI_STR", True): random_bytes_tuples (b"OBI_STR", False): random_bytes, (b"OBI_STR", True): random_bytes_tuples
}, },
'tests': [test_set_and_get, test_add_col, test_delete_col, test_col_alias, test_new_view] 'tests': [test_set_and_get, test_add_col, test_delete_col, test_col_alias, test_new_view],
'command_line': " ".join(sys.argv[1:])
} }
# TODO ??? # TODO ???

12
python/obitools3/dms/view/view.pyx
View File

@ -184,9 +184,15 @@ cdef class View(OBIWrapper) :
@OBIWrapper.checkIsActive @OBIWrapper.checkIsActive
def __repr__(self) : def __repr__(self) :
cdef str s = "#View name:\n{name:s}\n#Line count:\n{line_count:d}\n#Columns:\n".format(name = bytes2str(self.name), cdef str s
line_count = self.line_count) if self.read_only: # can read date
s = "#View name:\n{name:s}\n#Date created:\n{date:s}\n#Line count:\n{line_count:d}\n#Columns:\n".format(name = bytes2str(self.name),
line_count = self.line_count,
date = str(bytes2str_object(self.comments["Date created"])))
else:
s = "#View name:\n{name:s}\n#Line count:\n{line_count:d}\n#Columns:\n".format(name = bytes2str(self.name),
line_count = self.line_count)
for column_name in self.keys() : for column_name in self.keys() :
s = s + repr(self[column_name]) + '\n' s = s + repr(self[column_name]) + '\n'
return s return s