Implements #108 export integer missing values as 0 for tables by default

2021-07-21 14:41:54 +12:00
parent 32345b9ec4
commit e2932b05f2
8 changed files with 64 additions and 16 deletions
--- a/python/obitools3/format/fastq.pyx
+++ b/python/obitools3/format/fastq.pyx
@ -8,11 +8,12 @@ from obitools3.utils cimport bytes2str, str2bytes, tobytes
 # TODO quality offset option?
 cdef class FastqFormat:
 	
-	def __init__(self, list tags=[], bint printNAKeys=False, bytes NAString=b"NA"):
+	def __init__(self, list tags=[], bint printNAKeys=False, bytes NAString=b"NA", bint NAIntTo0=False):
 		self.headerFormatter = HeaderFormat("fastq",
 										    tags=tags,
 										    printNAKeys=printNAKeys,
-										    NAString=NAString)
+										    NAString=NAString,
+                                            NAIntTo0=NAIntTo0)
 		
 	@cython.boundscheck(False)	
 	def __call__(self, object data):