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Quality columns are now optional in NUC_SEQS views + minor fixes

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Celine Mercier
2016-08-16 15:17:26 +02:00
parent cf839522e7
commit e4129610cf
8 changed files with 54 additions and 52 deletions
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8
src/obiview.h
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@ -183,6 +183,7 @@ Obiview_p obi_new_view_cloned_from_name(OBIDMS_p dms, const char* view_name, con
* - NUC_SEQUENCE_COLUMN where nucleotide sequences are stored
* - ID_COLUMN where sequence identifiers are stored
* - DEFINITION_COLUMN where sequence definitions are stored
* And, if quality_column is True:
* - QUALITY_COLUMN where sequence qualities are stored
*
* @param dms A pointer on the OBIDMS.
@ -191,6 +192,7 @@ Obiview_p obi_new_view_cloned_from_name(OBIDMS_p dms, const char* view_name, con
* @param line_selection Eventually a pointer on a list of indexes corresponding to a line selection to use with the view to clone
* if there is one. NULL if there is no line selection or no view to clone.
* @param comments Eventually, comments to associate with the view. NULL if not.
* @param quality_column Whether or not a sequence quality column is associated with the view.
*
* @returns A pointer to the newly created view structure.
* @retval NULL if an error occurred.
@ -198,7 +200,7 @@ Obiview_p obi_new_view_cloned_from_name(OBIDMS_p dms, const char* view_name, con
* @since February 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
Obiview_p obi_new_view_nuc_seqs(OBIDMS_p dms, const char* view_name, Obiview_p view_to_clone, index_t* line_selection, const char* comments);
Obiview_p obi_new_view_nuc_seqs(OBIDMS_p dms, const char* view_name, Obiview_p view_to_clone, index_t* line_selection, const char* comments, bool quality_column);
/**
@ -215,6 +217,7 @@ Obiview_p obi_new_view_nuc_seqs(OBIDMS_p dms, const char* view_name, Obiview_p v
* - NUC_SEQUENCE_COLUMN where nucleotide sequences are stored
* - ID_COLUMN where sequence identifiers are stored
* - DEFINITION_COLUMN where sequence definitions are stored
* And, if quality_column is True:
* - QUALITY_COLUMN where sequence qualities are stored
*
* @param dms A pointer on the OBIDMS.
@ -223,6 +226,7 @@ Obiview_p obi_new_view_nuc_seqs(OBIDMS_p dms, const char* view_name, Obiview_p v
* @param line_selection Eventually a pointer on a list of indexes corresponding to a line selection to use with the view to clone
* if there is one. NULL if there is no line selection or no view to clone.
* @param comments Eventually, comments to associate with the view. NULL if not.
* @param quality_column Whether or not a sequence quality column is associated with the view.
*
* @returns A pointer to the newly created view structure.
* @retval NULL if an error occurred.
@ -230,7 +234,7 @@ Obiview_p obi_new_view_nuc_seqs(OBIDMS_p dms, const char* view_name, Obiview_p v
* @since February 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
Obiview_p obi_new_view_nuc_seqs_cloned_from_name(OBIDMS_p dms, const char* view_name, const char* view_to_clone_name, index_t* line_selection, const char* comments);
Obiview_p obi_new_view_nuc_seqs_cloned_from_name(OBIDMS_p dms, const char* view_name, const char* view_to_clone_name, index_t* line_selection, const char* comments, bool quality_column);
/**