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Views: Files for unfinished views now have the extension

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'.obiview_unfinished', renamed to '.obiview' when the view is finished.
This commit is contained in:
Celine Mercier
2017-02-07 17:16:09 +01:00
parent a9102620f5
commit e524041013
5 changed files with 384 additions and 214 deletions
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16
src/obi_align.c
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@ -4,7 +4,7 @@
/**
* @file obi_align.c
* @author Celine Mercier
* @author Celine Mercier (celine.mercier@metabarcoding.org)
* @date May 4th 2016
* @brief Functions handling LCS sequence alignments.
*/
@ -31,10 +31,6 @@
#define DEBUG_LEVEL 0 // TODO has to be defined somewhere else (cython compil flag?)
// TODO
// use openMP pragmas
/**************************************************************************
*
* D E C L A R A T I O N O F T H E P R I V A T E F U N C T I O N S
@ -618,12 +614,12 @@ int obi_lcs_align_one_column(OBIDMS_p dms, const char* seq_view_name, const char
}
// Close views
if (obi_close_view(seq_view) < 0)
if (obi_save_and_close_view(seq_view) < 0)
{
obidebug(1, "\nError closing the input view after aligning");
return -1;
}
if (obi_close_view(output_view) < 0)
if (obi_save_and_close_view(output_view) < 0)
{
obidebug(1, "\nError closing the output view after aligning");
return -1;
@ -963,19 +959,19 @@ int obi_lcs_align_two_columns(OBIDMS_p dms,
// Close views
if (seq2_view != seq1_view)
{
if (obi_close_view(seq2_view) < 0)
if (obi_save_and_close_view(seq2_view) < 0)
{
obidebug(1, "\nError closing the second input view after aligning");
return -1;
}
}
if (obi_close_view(seq1_view) < 0)
if (obi_save_and_close_view(seq1_view) < 0)
{
obidebug(1, "\nError closing the first input view after aligning");
return -1;
}
if (obi_close_view(output_view) < 0)
if (obi_save_and_close_view(output_view) < 0)
{
obidebug(1, "\nError closing the output view after aligning");
return -1;