obitools/obitools3
2
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases 66 Wiki Activity

New obi uniq: stores columns with too many elements per line as

Browse Source 
character strings, and keeps a minimum of things in the memory
This commit is contained in:
Celine Mercier
2017-12-13 22:49:08 +01:00
parent 1fd3323372
commit e9e7fac999
2 changed files with 292 additions and 216 deletions
Download Patch File Download Diff File Expand all files Collapse all files

2
python/obitools3/commands/uniq.pxd
View File

@ -6,4 +6,4 @@ from obitools3.dms.view.typed_view.view_NUC_SEQS cimport View_NUC_SEQS
cdef merge_taxonomy_classification(View_NUC_SEQS o_view, Taxonomy taxonomy)
cdef uniq_sequences(View_NUC_SEQS view, View_NUC_SEQS o_view, ProgressBar pb, list mergedKeys_list=*, Taxonomy taxonomy=*, bint mergeIds=*, list categories=*)
cdef uniq_sequences(View_NUC_SEQS view, View_NUC_SEQS o_view, ProgressBar pb, list mergedKeys_list=*, Taxonomy taxonomy=*, bint mergeIds=*, list categories=*, int max_elts=*)