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alignpairedend: fixed the worst memory leak and the handling of the case

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where 0 common kmers are found
This commit is contained in:
Celine Mercier
2019-03-29 11:16:25 +01:00
parent ceaafca427
commit ee9947217c
5 changed files with 46 additions and 43 deletions
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6
python/obitools3/dms/capi/kmer_similarity.pxd
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@ -35,10 +35,10 @@ cdef extern from "kmer_similarity.h" nogil:
OBIDMS_column_p qual_col1,
OBIDMS_column_p qual_col2,
uint8_t kmer_size,
int32_t* kmer_pos_array,
int32_t** kmer_pos_array,
int32_t* kmer_pos_array_height_p,
int32_t* shift_array,
int32_t** shift_array,
int32_t* shift_array_height_p,
int32_t* shift_count_array,
int32_t** shift_count_array,
int32_t* shift_count_array_height_p,
bint build_consensus)