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obi import: added SINTAX format import and switch to version 3.0.1b18

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This commit is contained in:
mercierc
2022-05-17 09:36:33 +12:00
parent 4f39bb2418
commit ef9d9674b0
4 changed files with 32 additions and 5 deletions
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6
python/obitools3/apps/optiongroups/__init__.py
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@ -63,6 +63,12 @@ def __addImportInputOption(optionManager):
const=b'unite',
help="Input file is in UNITE fasta format. If NCBI taxonomy provided with --taxonomy, taxid and scientific name will be added for each sequence.")
group.add_argument('--sintax-input',
action="store_const", dest="obi:inputformat",
default=None,
const=b'sintax',
help="Input file is in SINTAX fasta format. If NCBI taxonomy provided with --taxonomy, taxid and scientific name will be added for each sequence.")
group.add_argument('--embl-input',
action="store_const", dest="obi:inputformat",
default=None,