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obi uniq: fixed the remerging of already merged informations, and

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efficiency improvements
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Celine Mercier
2020-05-07 17:05:54 +02:00
parent 773b36ec37
commit f999946582
2 changed files with 93 additions and 52 deletions
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python/obitools3/commands/uniq.pxd
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@ -5,5 +5,5 @@ from obitools3.dms.taxo.taxo cimport Taxonomy
from obitools3.dms.view.typed_view.view_NUC_SEQS cimport View_NUC_SEQS
cdef merge_taxonomy_classification(View_NUC_SEQS o_view, Taxonomy taxonomy)
cdef uniq_sequences(View_NUC_SEQS view, View_NUC_SEQS o_view, ProgressBar pb, list mergedKeys_list=*, Taxonomy taxonomy=*, bint mergeIds=*, list categories=*, int max_elts=*)
cdef merge_taxonomy_classification(View_NUC_SEQS o_view, Taxonomy taxonomy, dict config)
cdef uniq_sequences(View_NUC_SEQS view, View_NUC_SEQS o_view, ProgressBar pb, dict config, list mergedKeys_list=*, Taxonomy taxonomy=*, bint mergeIds=*, list categories=*, int max_elts=*)