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Python: correctly flagged some mandatory options as required

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This commit is contained in:
Celine Mercier
2020-06-04 15:34:24 +02:00
parent 29a2652bbf
commit f9b6851f75
2 changed files with 3 additions and 0 deletions
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2
python/obitools3/commands/ecopcr.pyx
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@ -35,12 +35,14 @@ def addOptions(parser):
action="store", dest="ecopcr:primer1", action="store", dest="ecopcr:primer1",
metavar='<PRIMER>', metavar='<PRIMER>',
type=str, type=str,
required=True,
help="Forward primer, length must be less than or equal to 32") help="Forward primer, length must be less than or equal to 32")
group.add_argument('--primer2', '-R', group.add_argument('--primer2', '-R',
action="store", dest="ecopcr:primer2", action="store", dest="ecopcr:primer2",
metavar='<PRIMER>', metavar='<PRIMER>',
type=str, type=str,
required=True,
help="Reverse primer, length must be less than or equal to 32") help="Reverse primer, length must be less than or equal to 32")
group.add_argument('--error', '-e', group.add_argument('--error', '-e',

1
python/obitools3/commands/ngsfilter.pyx
View File

@ -42,6 +42,7 @@ def addOptions(parser):
metavar="<URI>", metavar="<URI>",
type=str, type=str,
default=None, default=None,
required=True,
help="URI to the view containing the samples definition (with tags, primers, sample names,...).\n" help="URI to the view containing the samples definition (with tags, primers, sample names,...).\n"
"\nWarning: primer lengths must be less than or equal to 32") "\nWarning: primer lengths must be less than or equal to 32")