obitools/obitools3
2
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases 66 Wiki Activity

Changed the cython API to create new views so as to have different

Browse Source 
functions for the different cases
This commit is contained in:
Celine Mercier
2016-12-07 14:17:57 +01:00
parent 936be64c34
commit fa4e4ffaff
4 changed files with 64 additions and 51 deletions
Download Patch File Download Diff File Expand all files Collapse all files

19
python/obitools3/commands/test.pyx
View File

@ -8,7 +8,7 @@ import string
import random
VIEW_TYPES = [None, "NUC_SEQS_VIEW"]
VIEW_TYPES = ["", "NUC_SEQS_VIEW"]
COL_TYPES = ["OBI_BOOL", "OBI_CHAR", "OBI_FLOAT", "OBI_INT", "OBI_SEQ", "OBI_STR"]
NUC_SEQUENCE_COLUMN = "NUC_SEQ"
ID_COLUMN = "ID"
@ -212,13 +212,12 @@ def fill_view(config, infos):
def random_new_view(config, infos, first=False):
v_to_clone = None
line_selection = None
clone = False
quality_col = False # TODO
if not first:
infos['view_names'].append(infos['view'].name)
infos['view'].close()
v_to_clone = infos['dms'].open_view(random.choice(infos["view_names"]))
v_type = None
v_type = ""
print_test(config, "View to clone: ")
print_test(config, repr(v_to_clone))
create_line_selection = random_bool(config)
@ -230,12 +229,14 @@ def random_new_view(config, infos, first=False):
#print_test(config, "New line selection: "+str(line_selection))
else :
v_type = random_view_type()
infos['view'] = infos['dms'].new_view(random_unique_name(infos),
view_to_clone=v_to_clone,
line_selection=line_selection,
view_type=v_type,
comments=random_str_with_max_len(config['test']['commentsmaxlen']),
quality_column=quality_col)
if line_selection is not None :
infos['view'] = infos['dms'].clone_view_with_line_selection(random_unique_name(infos), line_selection, comments=random_str_with_max_len(config['test']['commentsmaxlen']))
elif v_to_clone is not None :
infos['view'] = infos['dms'].clone_view(random_unique_name(infos), v_to_clone, comments=random_str_with_max_len(config['test']['commentsmaxlen']))
else :
infos['view'] = infos['dms'].new_view(random_unique_name(infos), view_type=v_type, comments=random_str_with_max_len(config['test']['commentsmaxlen']), quality_column=quality_col)
print_test(config, repr(infos['view']))
if v_to_clone is not None :
if line_selection is None: