|
|
5d08da46a2
|
Updated the documentation in obidmscolumn.h
|
2016-04-22 17:55:53 +02:00 |
|
|
|
66045acf1d
|
Creating a column now uses the function to create the indexer name if
one was not provided
|
2016-04-22 17:47:00 +02:00 |
|
|
|
6977c4315c
|
Improved function to build an indexer name
|
2016-04-22 17:38:23 +02:00 |
|
|
|
839b3000a8
|
Added a function to build indexer names
|
2016-04-22 17:08:23 +02:00 |
|
|
|
ffa4557928
|
changed MAP_PRIVATE flags to MAP_SHARED when opening a column because it
seems a lot more efficient
|
2016-04-22 16:26:24 +02:00 |
|
|
|
003cd11362
|
Fixed initialization of NA values for OBI_STR and OBI_SEQ columns
|
2016-04-22 16:14:23 +02:00 |
|
|
|
c87227b65a
|
Uncommented an error message that doesn't need to be commented anymore
|
2016-04-22 16:11:56 +02:00 |
|
|
|
c07e75f2ac
|
Updated the documentation for OBI_STR columns
|
2016-04-22 15:59:32 +02:00 |
|
|
|
6b394a5cf7
|
Updated the documentation for OBI_SEQ columns
|
2016-04-22 15:58:20 +02:00 |
|
|
|
2416b8ccd8
|
Deleted more unused inclusions in OBI_STR and OBI_SEQ column types code
|
2016-04-22 15:56:09 +02:00 |
|
|
|
b9921e111d
|
Removed unused inclusions and definitions in all column types code
|
2016-04-22 15:50:19 +02:00 |
|
|
|
8f5aa8841d
|
Removed unused definition in OBI_IDX columns code
|
2016-04-22 15:44:30 +02:00 |
|
|
|
900d67de87
|
Updated the documentation for columns with the type OBI_IDX
|
2016-04-22 15:43:39 +02:00 |
|
|
|
22e3c3eeed
|
Updated the documentation for obidms functions
|
2016-04-22 11:28:09 +02:00 |
|
|
|
4ead37ee48
|
Finished moving obiblob functions to obiblob files and documentation for
obiblob functions
|
2016-04-21 15:18:14 +02:00 |
|
|
|
bce360bbd5
|
Documentation for obiblob indexer API
|
2016-04-21 15:08:40 +02:00 |
|
|
|
2a68cb26f8
|
Improved AVL tree documentation
|
2016-04-21 15:07:27 +02:00 |
|
|
|
043e70ff49
|
Updated AVL documentation
|
2016-04-21 14:39:03 +02:00 |
|
|
|
66021367f6
|
Moved some blob functions to obiblob.c
|
2016-04-21 14:20:26 +02:00 |
|
|
|
e69f44ae3d
|
Little annotations for the murmur hash function.
|
2016-04-21 13:53:29 +02:00 |
|
|
|
1941a3785e
|
Updated encode functions documentation
|
2016-04-21 13:46:02 +02:00 |
|
|
|
c7b8db6a2e
|
Replaced malloc+memset with calloc
|
2016-04-21 13:45:39 +02:00 |
|
|
|
1dc4a3be49
|
Documentation for DNA sequence indexing functions
|
2016-04-21 13:36:51 +02:00 |
|
|
|
09597016fd
|
Short doc for crc function
|
2016-04-21 13:23:52 +02:00 |
|
|
|
1a2fa0923c
|
Documented the functions indexing and retrieving character strings
|
2016-04-21 11:35:21 +02:00 |
|
|
|
00f2f2cc51
|
Documented changes made in bloom functions
|
2016-04-21 11:22:31 +02:00 |
|
|
|
7a88ca619a
|
First obi import (doesn't import tags yet because NA values aren't
handled)
|
2016-04-15 17:00:08 +02:00 |
|
|
|
eddd19a245
|
Changes in obi commands
|
2016-04-15 16:59:21 +02:00 |
|
|
|
2aafecc3b5
|
Changed sequence 'description' to 'definition' everywhere
|
2016-04-15 16:31:43 +02:00 |
|
|
|
094b2371e9
|
Deleted obsolete directory
|
2016-04-15 14:44:31 +02:00 |
|
|
|
c1034d300d
|
merging and fixed git conflict with obiavl.h
|
2016-04-15 13:23:29 +02:00 |
|
|
|
02d67c257f
|
The default name of an AVL is now the column name + '_indexer', and when
an AVL is opened (as opposed to created), it is read-only
|
2016-04-15 12:55:26 +02:00 |
|
|
|
e04ea85d1e
|
Fixed problematic __str__ method and useless declarations in the
OBI_Nuc_Seq_Stored class
|
2016-04-15 11:22:05 +02:00 |
|
|
|
527d3555f0
|
Moved the functions getting full paths for files and directories to
obidms.c/.h files
|
2016-04-15 11:11:13 +02:00 |
|
|
|
71492ad229
|
Made the handling of listing and unlisting opened columns and indexers
functions in the obidms files.
|
2016-04-15 10:49:12 +02:00 |
|
|
|
73d64e5aff
|
Renamed 'unmap_header' function to 'close_header'
|
2016-04-14 15:19:27 +02:00 |
|
|
|
4cb52e1632
|
Made the truncating of columns automatic when closing them (note:
already the case for AVLs)
|
2016-04-14 15:13:30 +02:00 |
|
|
|
9d042f7bd0
|
Refactored and relocated the set and get functions of all column types,
both within and out of the context of a view
|
2016-04-13 15:10:24 +02:00 |
|
|
|
5ec2d8842e
|
Character string indexer API
|
2016-04-12 17:21:01 +02:00 |
|
|
|
04c9470f7d
|
Fixed and cleaned DNA_seq_indexer API
|
2016-04-12 17:20:24 +02:00 |
|
|
|
be05c889e2
|
DNA_seq_indexer API
|
2016-04-12 16:38:47 +02:00 |
|
|
|
04e3a7b5a9
|
Added more references in cython .cfiles files because it seems necessary
for linux distributions
|
2016-04-12 15:10:54 +02:00 |
|
|
|
d8107533d8
|
Obiblob_indexer API
|
2016-04-12 14:53:33 +02:00 |
|
|
|
cd4e65e190
|
Fixed typo and includes in obiblob files
|
2016-04-12 14:52:27 +02:00 |
|
|
|
375bfcce8a
|
Renamed "Obi_byte_arrays" to "Obiblobs" and moved Obiblob functions to
separate obiblob.c and obiblob.h files
|
2016-04-12 11:21:14 +02:00 |
|
|
|
c225cfd8b6
|
Fixed bug with retrieval of values from AVLs (bad cast in byte array
structure)
|
2016-04-11 17:07:22 +02:00 |
|
|
|
6fe4c6134a
|
Allows for calling getConfiguration without parametter for geting the
default configuration
|
2016-04-11 13:31:09 +02:00 |
|
|
|
966b1325ed
|
Deleted declaration of obsolete public function
|
2016-04-11 11:14:20 +02:00 |
|
|
|
019dfc01b4
|
Branch to refactor and debug (AVLs bugged)
|
2016-04-08 15:38:57 +02:00 |
|
|
|
45c9c5075c
|
A first version of the fasta parser
|
2016-04-01 18:15:54 +02:00 |
|
