Commit Graph

28 Commits

Author SHA1 Message Date
822000cb70 Fixes in documentation 2020-01-18 17:26:18 +01:00
ba9ba7aa60 obi grep: now able to convert str to bytes in predicate expressions 2019-09-22 16:44:45 +02:00
ec0737a600 Added signal catching and handling in C and Cython 2019-09-21 16:47:22 +02:00
f296517716 Various display improvements 2019-09-03 21:46:39 +02:00
1ed2d45ac4 obi grep: made an error message clearer (error could be eventually be
handled by program, looking for str in bytes returned by a column)
2019-08-29 17:17:52 +02:00
187053026f Better detection of missing taxonomy 2019-08-29 16:10:09 +02:00
f16bbca8e2 obi grep: fixed a bug where -p option didn't work 2019-03-30 19:10:42 +01:00
478d19ab43 Cleaner stderr prints 2019-03-13 18:36:31 +01:00
35f3e7c30b All commands now handle outputing to another DMS + small fixes 2018-11-02 19:03:09 +01:00
e18b762d81 Weird buggy Eclipse commit with nothing changed 2018-10-21 17:35:18 +02:00
58589e04be Cython: rearranged input and output format options to have both and
updated commands accordingly
2018-10-17 11:19:48 +02:00
e9a41c5b97 Commands: updated for JSON formatted comments with history 2018-10-07 19:10:34 +02:00
1b6b6d825a obi grep: added all the missing filtering options 2018-08-14 17:11:41 +02:00
75b54c83ca obi grep: fixed bug when reading URIs 2018-03-21 16:34:57 +01:00
d4f7e02c85 New obi grep working with URI API 2018-03-16 19:04:54 +01:00
da48a9d1af Patch group of option : types must be callable not a string 2017-07-28 09:36:18 +02:00
fa8f826cdc Cleanup the end of the file 2017-07-27 16:07:39 +02:00
0f6ae7dfa6 Options stuff... ;-) 2017-07-25 13:07:03 +02:00
b24be84b0a Add a first group of options 2017-07-25 11:14:30 +02:00
ca16ce0bb0 Basic obi grep with new Cython API 2017-07-05 11:58:10 +02:00
b998373be5 Cython API: updated the test command for the new API and deactivated the
other commands for now
2017-04-14 16:21:33 +02:00
381194194c Cython API: compiling but not working 2017-03-06 16:07:02 +01:00
fa4e4ffaff Changed the cython API to create new views so as to have different
functions for the different cases
2016-12-07 14:17:57 +01:00
8291693309 obi grep: updated to work with the new line selection class and within
the local sequence environment, and progress bar functioning
2016-11-08 11:19:12 +01:00
9cd57deca9 Added OBIView_line_selection class to make new line selections
associated with the view to clone, and improved and renamed method
closing a view
2016-09-30 17:48:53 +02:00
e4129610cf Quality columns are now optional in NUC_SEQS views + minor fixes 2016-08-16 15:17:26 +02:00
cf839522e7 Minor update and fix to obi grep command 2016-08-12 17:45:44 +02:00
64a745ce0b First very basic version of obi grep command 2016-08-11 17:32:08 +02:00