|
|
425fe25bd2
|
Made the OBITools3 more 'empty file friendly'
|
2021-03-15 16:25:41 +13:00 |
|
|
|
ad1fd3c341
|
Now handling dictionaries with one key
|
2021-03-10 16:50:30 +13:00 |
|
|
|
aab59f2214
|
obi clean: fixed a memory bug, fixed the behaviour when no sample info,
and added checks warnings and error handling when sample info not
dereplicated
|
2020-07-01 18:17:47 +02:00 |
|
|
|
d0c21ecd39
|
Removed an OpenMP clause that was not obligatory and triggered a known
gcc bug involving macros
|
2020-01-24 16:00:53 +01:00 |
|
|
|
ec0737a600
|
Added signal catching and handling in C and Cython
|
2019-09-21 16:47:22 +02:00 |
|
|
|
bc55c5ef8c
|
obi clean: fixed an openmp bug where the share size would be 0 blocking
the program
|
2019-09-10 15:37:33 +02:00 |
|
|
|
3d9f0352ff
|
obiclean parallelized
|
2019-06-20 19:44:04 +02:00 |
|
|
|
9b4c3537f9
|
multithreaded obiclean working but not cleaned
|
2019-06-19 17:29:58 +02:00 |
|
|
|
fd0b7a9177
|
j loop with critical (untested)
|
2019-06-04 17:14:36 +02:00 |
|
|
|
debf59b266
|
i loop parallelized: bad
|
2019-05-25 18:37:56 +02:00 |
|
|
|
a04588da31
|
openmp on j loop (i loop probably better)
|
2019-05-24 16:51:04 +02:00 |
|
|
|
22a5ae72d1
|
obi clean: not using tsearch library anymore, a simple byte array
instead. A lot more time and memory efficient. Closes #67
|
2019-05-19 17:39:53 +02:00 |
|
|
|
730ea99f85
|
minor fixes and comments
|
2018-11-19 11:23:54 +01:00 |
|
|
|
c7ff53b948
|
obi clean: temporary views are now deleted
|
2018-10-31 17:52:51 +01:00 |
|
|
|
6305282305
|
obi clean: made more efficient with arrays (speed ~x15 compared with
OBI1)
|
2018-10-21 17:59:02 +02:00 |
|
|
|
b98880b7fa
|
Various non-important fixes and comments
|
2018-07-28 17:07:17 +02:00 |
|
|
|
1de308a856
|
obi clean: option to only keep heads now works, fixed a bug where last
sequence was not properly labelled, and code is cleaned, fixed and error
checked
|
2018-05-31 15:11:41 +02:00 |
|
|
|
6911bf4d70
|
obi clean: first version
|
2018-05-18 14:26:54 +02:00 |
|
