Commit Graph

25 Commits

Author SHA1 Message Date
e43e49d6f1 C: optimized dir opening 2019-08-29 16:35:10 +02:00
e9c1d5e48d AVLs: made maximum number of nodes per AVL 5 millions, as this combined
with keeping all AVLs mapped seems the most efficient. Now 1 million
sequences more or less constantly takes 1 minute.
2018-11-19 11:22:26 +01:00
e18b762d81 Weird buggy Eclipse commit with nothing changed 2018-10-21 17:35:18 +02:00
b98880b7fa Various non-important fixes and comments 2018-07-28 17:07:17 +02:00
344566d9e9 AVLs: made some functions public and changed some rights to be able to
import AVLs from a DMS to another
2017-08-03 16:27:43 +02:00
b408a4f6eb Changed file name limits to adapt to system limits + minor changes 2016-09-22 18:05:07 +02:00
de189fd7e0 Fixed major bug when cloning an AVL where the bloom filter was not
copied properly (because the sutructure copy via assignation does not
work for structures with a variable size)
2016-09-15 11:47:02 +02:00
c9dce03295 Fixed major bug when cloning an AVL group (last AVL of new group was not
correctly enlarged before copying the data) + minor improvements
2016-09-05 12:29:52 +02:00
fc3641d7ff Read-only AVLs are now hard-linked instead of copied when cloning an AVL
group to make it writable. Also fixed several bugs when handling AVL
groups.
2016-06-03 19:02:46 +02:00
6a8df069ad Indexers are now cloned if needed to modify them after they've been
closed. Obligatory indexers' names now follow the same pattern as other
indexers (columnname_version). Closes #46 and #49.
2016-05-18 13:23:48 +02:00
31cf27d676 Added indexer function that returns the name of the indexer 2016-04-29 16:18:56 +02:00
2a68cb26f8 Improved AVL tree documentation 2016-04-21 15:07:27 +02:00
043e70ff49 Updated AVL documentation 2016-04-21 14:39:03 +02:00
02d67c257f The default name of an AVL is now the column name + '_indexer', and when
an AVL is opened (as opposed to created), it is read-only
2016-04-15 12:55:26 +02:00
71492ad229 Made the handling of listing and unlisting opened columns and indexers
functions in the obidms files.
2016-04-15 10:49:12 +02:00
d8107533d8 Obiblob_indexer API 2016-04-12 14:53:33 +02:00
375bfcce8a Renamed "Obi_byte_arrays" to "Obiblobs" and moved Obiblob functions to
separate obiblob.c and obiblob.h files
2016-04-12 11:21:14 +02:00
019dfc01b4 Branch to refactor and debug (AVLs bugged) 2016-04-08 15:38:57 +02:00
ff6c27acf2 Implemented the retrieval of values with groups of AVLs 2016-03-25 15:35:16 +01:00
69856f18dd untested (and no possible retrieval) of CRC used to represent data in
AVL trees
2016-03-24 16:38:11 +01:00
58ac860cc7 Added macro for the bloom filter parameters and deleted old unused
macros for crc
2016-03-23 13:33:40 +01:00
3681cecb4d Multiple AVLs with bloom filters (very raw test version) 2016-03-18 11:06:02 +01:00
545ed8111a Code for tests storing data in multiple AVLs.
(note: unretrievable data as implemented)
2016-03-11 15:34:55 +01:00
8e9e21a02e Increased the maximum depth of AVL trees 2016-02-29 16:27:23 +01:00
c139367555 DNA sequences and character strings are now handled using AVL trees. 2015-12-11 17:24:44 +01:00