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8291693309
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obi grep: updated to work with the new line selection class and within
the local sequence environment, and progress bar functioning
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2016-11-08 11:19:12 +01:00 |
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4bc19c3e49
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obi export: view type is now checked and progress bar functioning
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2016-11-08 11:17:20 +01:00 |
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9cd57deca9
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Added OBIView_line_selection class to make new line selections
associated with the view to clone, and improved and renamed method
closing a view
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2016-09-30 17:48:53 +02:00 |
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d88811ed7d
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Added a seed option to the obi test command for reproducible tests
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2016-09-29 17:34:48 +02:00 |
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b717e8bb8b
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Added properties for the OBIView class and cleaned up deprecated code
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2016-09-28 14:26:23 +02:00 |
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03a2c8ef7c
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Finished restructuring the OBIDMS_column class properties
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2016-09-27 14:16:30 +02:00 |
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a4b8349274
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Added data_type property to OBIDMS_column class
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2016-09-26 17:12:20 +02:00 |
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a0bc45cc92
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Added elements_names property to OBIDMS_column class
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2016-09-26 16:53:16 +02:00 |
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76f89717fe
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Added alias property to OBIDMS_column cython class
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2016-09-26 16:12:48 +02:00 |
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b408a4f6eb
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Changed file name limits to adapt to system limits + minor changes
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2016-09-22 18:05:07 +02:00 |
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9ac522fde1
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Better obi test command
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2016-09-21 17:06:35 +02:00 |
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8f49553d5a
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First version of the obi test command, testing that the OBITools3 work
correctly
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2016-09-15 12:26:07 +02:00 |
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8d360b0fac
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Minor improvements to obi export command
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2016-08-19 17:49:22 +02:00 |
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b34769b27c
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Minor improvements to obi export command
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2016-08-19 17:46:55 +02:00 |
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2d0a714e37
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Basic obi export command exporting from view to fasta or fastq format,
for testing purposes
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2016-08-19 17:40:58 +02:00 |
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e4129610cf
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Quality columns are now optional in NUC_SEQS views + minor fixes
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2016-08-16 15:17:26 +02:00 |
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cf839522e7
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Minor update and fix to obi grep command
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2016-08-12 17:45:44 +02:00 |
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ad8e10f2d1
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Reworked a bit alignment API
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2016-08-12 15:56:07 +02:00 |
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64a745ce0b
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First very basic version of obi grep command
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2016-08-11 17:32:08 +02:00 |
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2aaa87edcc
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1st version of obi align command and reworked functions that handle
column alignment
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2016-08-10 14:51:02 +02:00 |
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3b59043ea8
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Major update: New column type to store sequence qualities. Closes #41
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2016-05-20 16:45:22 +02:00 |
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d159b921eb
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Fixed obi import trying to print all lines at the end (source of
segfault?)
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2016-04-27 13:14:19 +02:00 |
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a6c8d35491
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import command a bit modified for tests
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2016-04-26 14:29:54 +02:00 |
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7a88ca619a
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First obi import (doesn't import tags yet because NA values aren't
handled)
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2016-04-15 17:00:08 +02:00 |
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b926ca3997
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A template for a command
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2016-03-28 15:04:06 +02:00 |
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