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69c50ff922
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Cython API: added a Column subclass to allow direct access to indexes
for columns that store indexes referring to other data
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2017-07-27 19:29:10 +02:00 |
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c91969126b
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Cython C API declarations to go with previous commit
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2017-07-27 19:26:59 +02:00 |
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15d383fa8b
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Added possibility to specify the offset for encoding and decoding
sequence quality character strings
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2017-07-27 19:24:41 +02:00 |
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99ceed5fff
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Cython API: renamed OBI_Taxonomy to Taxonomy and OBI_Taxon to Taxon
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2017-07-27 19:21:45 +02:00 |
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df2ad41150
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Cython APi: Added a width property to views, corresponding to their
column count
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2017-07-11 11:46:32 +02:00 |
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f8895e879d
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Cython API: Added a function to get a column from its index in the view
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2017-07-11 11:36:42 +02:00 |
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b94ec9557f
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Cython API: None values aren't inclued anymore in the dictionary
returned when getting a line from a column with multiple elements per
line, and reworked that function to be more optimized
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2017-07-07 17:28:53 +02:00 |
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143bddf1d1
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Cython API: Added an __iter__ method to the class Column_line (iterating
on the elements names) (previously an iteration would work but with
unexpected results)
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2017-07-07 15:41:10 +02:00 |
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a718081ebd
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Bug with error handling: for now obi_errno needs to be passed to the
function handling errors and exceptions, as it can't read the right
value of the global obi_errno (Cython configuration problem?)
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2017-07-07 15:36:11 +02:00 |
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717ee46f08
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Commented a loose print
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2017-07-05 18:02:18 +02:00 |
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313508cc94
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Better *Seq* classes but still need work
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2017-07-05 17:53:46 +02:00 |
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535fc2af83
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Column rewriter and optimized View getter
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2017-07-05 17:49:05 +02:00 |
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3bbc2ae469
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More optimized Column item getter
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2017-07-05 17:37:19 +02:00 |
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5ee0b3989a
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Cython API: set_line of Column_multi_elts now accept as values argument
any class where values are referenced by keys with an iterator
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2017-07-05 17:32:32 +02:00 |
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d10192ab0e
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C functions to detect IUPAC sequences
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2017-07-05 17:26:03 +02:00 |
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cb5ad2ed2d
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Added functions to try to open a DMS if it exists
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2017-07-05 15:38:22 +02:00 |
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1d2996c6c0
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Better handling and tracing of Index Errors between C and Cython
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2017-07-05 14:45:43 +02:00 |
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f6631f3857
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Removed deprecated declarations
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2017-07-05 14:42:21 +02:00 |
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2d65db4ebc
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Goes with c2af955b : forgotten files for NUC_SEQS views
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2017-04-21 15:15:12 +02:00 |
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c2af955b78
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Cython view API: added NUC_SEQS views and sequence classes + changed
cloning API
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2017-04-21 12:08:14 +02:00 |
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1725b8b80c
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Reworked taxonomy Cython API to be a subclass of OBIWrapper
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2017-04-21 11:54:05 +02:00 |
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ab0d08293e
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Cython API: removed unnecessary imports
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2017-04-21 11:51:05 +02:00 |
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6f780148e2
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Cython API: added taxonomy API
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2017-04-14 16:20:30 +02:00 |
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0e08fc486a
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Cython API: fixed bug when deleting a column from a view where the
Cython wrapper wasn't closed, and fixed the Line selection
materialization
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2017-04-14 16:19:18 +02:00 |
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2bbee64e57
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Cython API: fixed problems with Column class
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2017-04-14 16:14:41 +02:00 |
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693859eec2
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Cython API: fixed conversion bugs when setting and getting values
(especially NA values) in OBI_CHAR, OBI_STR and OBI_SEQ columns
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2017-04-14 16:07:23 +02:00 |
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a3fad27190
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Cython API: automatic importing of column classes now works
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2017-04-06 15:45:02 +02:00 |
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f351540b0b
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Merge branch 'Eric_new_Python_API' of git@git.metabarcoding.org:obitools/obitools3.git into Eric_new_Python_API
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2017-04-06 15:39:52 +02:00 |
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6dccaa0213
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Patch the registering function : register_all_column_classes
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2017-04-06 15:37:51 +02:00 |
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5de9e0de51
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Cython API: now using const char* instead of char* for the type of
values read from OBI_STR columns
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2017-04-06 15:15:20 +02:00 |
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8cd3e3604f
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Cython Column API
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2017-04-06 14:42:11 +02:00 |
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255f3c92ae
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Cython View API
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2017-04-06 14:41:58 +02:00 |
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08be4e231d
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Cython Object API
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2017-04-06 14:41:43 +02:00 |
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b5b7995411
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new Cython DMS API
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2017-04-06 14:41:26 +02:00 |
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0dfb1eb3e6
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Cython typed columns
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2017-04-06 14:40:44 +02:00 |
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381194194c
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Cython API: compiling but not working
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2017-03-06 16:07:02 +01:00 |
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778acc48cd
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Added linked lists to handle lists of column pointers in views (not
tested)
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2017-03-06 16:06:17 +01:00 |
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fc20b83ad1
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Merging
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2017-02-20 14:56:04 +01:00 |
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431c1c8c6a
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Merge branch 'Eric_new_Python_API' of
git@git.metabarcoding.org:obitools/obitools3.git into
Eric_new_Python_API
Conflicts:
python/obitools3/obidms/_obidms.pxd
python/obitools3/obidms/_obidms.pyx
python/obitools3/obidms/_obidmscolumn_bool.pyx
python/obitools3/obidms/_obidmscolumn_str.pyx
python/obitools3/obidms/_obiseq.pxd
python/obitools3/obidms/_obiseq.pyx
python/obitools3/obidms/_obitaxo.pxd
python/obitools3/obidms/_obitaxo.pyx
python/obitools3/obidms/_obiview.pxd
python/obitools3/obidms/_obiview.pyx
python/obitools3/obidms/_obiview_nuc_seq.pxd
python/obitools3/obidms/_obiview_nuc_seq.pyx
python/obitools3/obidms/_obiview_nuc_seq_qual.pxd
python/obitools3/obidms/_obiview_nuc_seq_qual.pyx
python/obitools3/obidms/capi/obialign.pxd
python/obitools3/obidms/capi/obidmscolumn.pxd
python/obitools3/obidms/capi/obitaxonomy.pxd
python/obitools3/obidms/capi/obiview.pxd
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2017-02-20 14:55:36 +01:00 |
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cf7f2de016
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Modify __init__ and close method to deal with registration process
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2017-01-10 14:26:16 +01:00 |
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4b02ba73ac
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Add the OBIObject concept
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2017-01-10 14:07:10 +01:00 |
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4a1d3167a7
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Last change on my branch
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2017-01-02 16:46:52 +01:00 |
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2139bfc748
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refactoring...
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2017-01-02 13:05:22 +01:00 |
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65f3b16e6d
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Refactoring ...
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2016-12-29 18:22:05 +01:00 |
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0526386337
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first working DMS class
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2016-12-27 06:17:45 +01:00 |
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62caf1346e
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temporary remove some files
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2016-12-26 15:03:24 +01:00 |
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3ac6e85fb3
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Big refactoring 4
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2016-12-26 14:58:03 +01:00 |
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5156f6bb9e
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Big refactoring 3
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2016-12-26 14:18:01 +01:00 |
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e6db2086d5
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Big refactoring 2
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2016-12-26 13:56:31 +01:00 |
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daacd0df76
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Strong refactoring 1
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2016-12-26 13:35:31 +01:00 |
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