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e18b762d81
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Weird buggy Eclipse commit with nothing changed
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2018-10-21 17:35:18 +02:00 |
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a9102620f5
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Fixed missing email address
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2017-02-07 17:14:10 +01:00 |
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5c50e5b378
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Embryo of code for openMP parallelization of LCS alignment but
deactivated for now because can't make it compile with cython/clang
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2016-12-20 11:46:58 +01:00 |
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d99447c12b
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C function for LCS alignment of two columns, and optimized and fixed
line count bug in function to align one column
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2016-12-16 19:39:02 +01:00 |
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8afb1644e9
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Alignment: API rework. 'obi align' is now 'obi lcs', and the results are
now written to columns automatically created in the output view, all
optimally handled at the C level.
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2016-12-12 11:58:59 +01:00 |
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98d0849653
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Sequence alignment: added the possibility to specify the index of the
sequences to align in a column containing multiple sequences per line (C
level for now)
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2016-11-29 16:15:02 +01:00 |
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70c49e214a
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Added the kmer filter to LCS alignments, and now obiblobs containing
encoded sequences are directly put in int16_t arrays for the alignment
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2016-11-18 16:29:28 +01:00 |
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2aaa87edcc
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1st version of obi align command and reworked functions that handle
column alignment
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2016-08-10 14:51:02 +02:00 |
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b3c47809da
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First version of alignment functions (imported from suma* programs)
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2016-05-11 16:36:23 +02:00 |
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