Celine Mercier
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8afb1644e9
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Alignment: API rework. 'obi align' is now 'obi lcs', and the results are
now written to columns automatically created in the output view, all
optimally handled at the C level.
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2016-12-12 11:58:59 +01:00 |
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Celine Mercier
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6f6099687d
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Sequence alignment: if no sequence column is given and the view has the
type NUC_SEQS_VIEW, the default sequence column is aligned
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2016-11-29 16:52:41 +01:00 |
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Celine Mercier
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98d0849653
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Sequence alignment: added the possibility to specify the index of the
sequences to align in a column containing multiple sequences per line (C
level for now)
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2016-11-29 16:15:02 +01:00 |
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Celine Mercier
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5fb025f310
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When aligning, it is now quickly checked whether the sequences are
identical using their indexes
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2016-11-28 11:39:29 +01:00 |
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Celine Mercier
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70c49e214a
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Added the kmer filter to LCS alignments, and now obiblobs containing
encoded sequences are directly put in int16_t arrays for the alignment
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2016-11-18 16:29:28 +01:00 |
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Celine Mercier
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2aaa87edcc
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1st version of obi align command and reworked functions that handle
column alignment
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2016-08-10 14:51:02 +02:00 |
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Celine Mercier
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ad2af0b512
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Some comments updated
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2016-06-16 11:26:54 +02:00 |
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Celine Mercier
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b3c47809da
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First version of alignment functions (imported from suma* programs)
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2016-05-11 16:36:23 +02:00 |
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