Commit Graph

32 Commits

Author SHA1 Message Date
0869b9ba3f Closes issue #47 by storing each view in a separate file named with the
view's name and created upon view creation.
2016-06-30 11:41:30 +02:00
a32920e401 Relative paths when creating or opening a DMS now work 2016-04-29 17:46:36 +02:00
31cf27d676 Added indexer function that returns the name of the indexer 2016-04-29 16:18:56 +02:00
5bd12079ae Added comments about listing columns and indexers in obidms functions 2016-04-29 16:06:01 +02:00
22e3c3eeed Updated the documentation for obidms functions 2016-04-22 11:28:09 +02:00
2aafecc3b5 Changed sequence 'description' to 'definition' everywhere 2016-04-15 16:31:43 +02:00
527d3555f0 Moved the functions getting full paths for files and directories to
obidms.c/.h files
2016-04-15 11:11:13 +02:00
71492ad229 Made the handling of listing and unlisting opened columns and indexers
functions in the obidms files.
2016-04-15 10:49:12 +02:00
d8107533d8 Obiblob_indexer API 2016-04-12 14:53:33 +02:00
019dfc01b4 Branch to refactor and debug (AVLs bugged) 2016-04-08 15:38:57 +02:00
b04b4b5902 made POSIX compliant 2016-03-21 11:33:06 +01:00
a8f03248a8 Major update : views 2016-02-18 10:38:51 +01:00
c139367555 DNA sequences and character strings are now handled using AVL trees. 2015-12-11 17:24:44 +01:00
1586956d57 Added the lists of opened columns and arrays in the OBIDMS structure,
and a counter in the OBIDMS column structure; fixed some bugs and
created tests for referring columns that are bound to disappear anyway.
2015-12-02 17:32:07 +01:00
dbf9463238 The endianness of a DMS is now stored in the OBIDMS structure 2015-11-18 15:35:09 +01:00
e8417b4f6f The endianness of an OBIDMS is now stored in an informations file that
is read when opening the OBIDMS.
2015-11-16 14:37:51 +01:00
65c1b1e8b2 Minor changes to make the creation of files and directories cleaner 2015-11-09 15:22:01 +01:00
b37bd8f21c File descriptors for dms, column and array directories are now stored in
structures.
2015-11-09 15:06:02 +01:00
05e3956a0c Minor changes in code to improve readability (freeing some character
strings earlier)
2015-11-09 11:22:51 +01:00
9b066f4327 Major update: obiarrays with columns containing indices referring to
character strings.
2015-11-06 17:55:15 +01:00
456551ffeb obi arrays that don't work because of cython bug passing wrong pointers 2015-11-03 14:22:00 +01:00
4b7f2d268b Doxygen documentation corrected and completed. 2015-09-30 12:03:46 +02:00
9ab8a42340 fixed the mkdir permission mode that forced the user to use sudo to
write in the created directories
2015-09-21 15:48:02 +02:00
2698022aaf New OBIDMS method to list the columns of an OBIDMS 2015-09-15 17:09:31 +02:00
41f627091f Error handling: obidebug() with message for all errors, and removed
commands closing directories when an error occurred (creating more
errors).
2015-08-03 15:10:39 +02:00
5f62cd8526 C sources modified to add the handling of OBIDM columns with the type
OBI_INT, and the handling of multiple types in general
2015-07-31 18:03:48 +02:00
152b34b5f4 Closes #10 : column groups stored in directories 2015-06-23 18:35:34 +02:00
ed662077b3 fixed bugs and typos in the obidms and obidmscolumn source and header
files
2015-06-17 16:51:16 +02:00
5d967f5b7b fixed typos and other minor things 2015-06-10 15:19:02 +02:00
d1324618b8 Makes few cleanning and adds an obi_dms C constructor 2015-05-26 21:36:55 +02:00
6248160eeb C Syntax error patches 2015-05-26 10:38:56 +02:00
57db677d1f First minimal implementation of what should be the creation, opening and
closing of an OBIDMS
2015-05-23 16:29:06 +03:00