ad1fd3c341
Now handling dictionaries with one key
2021-03-10 16:50:30 +13:00
137c109f86
obi ls: now done in C (preparing things for R packages to read DMS) and
...
switch to version 3.0.0b36
2020-09-29 17:51:39 +02:00
0f745e0113
C: Columns: optimizing column file growth
2020-04-18 13:55:47 +02:00
8dbcd3025a
C: Columns: reduced column growth factor from 2 to 1.3 to avoid errno28
2020-04-13 14:47:56 +02:00
783a1343c4
DMS are now locked when used by a command. Added checks and changed
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cleaning mechanisms.
2019-09-20 20:37:19 +02:00
5f20be44b2
Minor fixes
2019-08-18 19:45:53 +02:00
e18b762d81
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
bc8c394061
Columns: implemented handling of JSON formatted comments
2018-10-07 18:54:51 +02:00
b98880b7fa
Various non-important fixes and comments
2018-07-28 17:07:17 +02:00
f0c147c252
C API: Added a function to set an entire column to a specified (atomic)
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value.
2018-05-17 15:59:16 +02:00
1fd3323372
Columns: elements names informations are now kept in a memory arena of
...
adapted size in the header, and added a boolean in the header indicating
whether the values should be evaluated (typically character strings to
be evaluated in Python)
2017-12-13 22:46:50 +01:00
9a50803c00
Added tuple columns containing immutable indexed data arrays of any type
2017-11-15 13:48:59 +01:00
dfd51939a0
Views are now rollbacked if an error occurs, and unfinished views and
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columns are deleted when an OBIDMS is opened.
2017-10-26 18:58:48 +02:00
9fc6868341
Increased maximum length for elements names
2017-10-04 16:10:53 +02:00
c5f3fdc295
Increased maximum element names length in columns
2017-07-27 19:44:49 +02:00
59dd0a8a8c
Standardized and improved the API to create new columns, updated the doc
2017-07-18 17:34:32 +02:00
1e57bfacb4
Fixed some C documentation
2017-07-17 16:45:08 +02:00
f5e992abbf
Added a check on the element when setting a value in a column
2017-07-05 14:49:20 +02:00
537b9847da
Minor C doc clarification
2017-04-14 16:23:17 +02:00
431c1c8c6a
Merge branch 'Eric_new_Python_API' of
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git@git.metabarcoding.org:obitools/obitools3.git into
Eric_new_Python_API
Conflicts:
python/obitools3/obidms/_obidms.pxd
python/obitools3/obidms/_obidms.pyx
python/obitools3/obidms/_obidmscolumn_bool.pyx
python/obitools3/obidms/_obidmscolumn_str.pyx
python/obitools3/obidms/_obiseq.pxd
python/obitools3/obidms/_obiseq.pyx
python/obitools3/obidms/_obitaxo.pxd
python/obitools3/obidms/_obitaxo.pyx
python/obitools3/obidms/_obiview.pxd
python/obitools3/obidms/_obiview.pyx
python/obitools3/obidms/_obiview_nuc_seq.pxd
python/obitools3/obidms/_obiview_nuc_seq.pyx
python/obitools3/obidms/_obiview_nuc_seq_qual.pxd
python/obitools3/obidms/_obiview_nuc_seq_qual.pyx
python/obitools3/obidms/capi/obialign.pxd
python/obitools3/obidms/capi/obidmscolumn.pxd
python/obitools3/obidms/capi/obitaxonomy.pxd
python/obitools3/obidms/capi/obiview.pxd
2017-02-20 14:55:36 +01:00
e50da64ea1
The elements names when a column contains several elements per line are
...
now formatted with '\0' as separator and handled in a more optimized way
2017-01-31 16:48:06 +01:00
daacd0df76
Strong refactoring 1
2016-12-26 13:35:31 +01:00
936be64c34
Goes with 5e0c9f87 (missing ';' and fixed compilation warnings)
2016-12-05 11:18:29 +01:00
852e5488c8
The default element names for columns with multiple elements per line
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are now "O;1;2;...;n"
2016-12-02 17:54:51 +01:00
7d022c1a52
If the indexer name is NULL when creating a column, it now becomes the
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column name
2016-11-18 15:56:51 +01:00
8f724f4f8e
Some code refactoring
2016-11-09 16:48:00 +01:00
b408a4f6eb
Changed file name limits to adapt to system limits + minor changes
2016-09-22 18:05:07 +02:00
38718320f9
First version for the association of one column to another. Closes #55
2016-07-15 15:38:49 +02:00
5d08da46a2
Updated the documentation in obidmscolumn.h
2016-04-22 17:55:53 +02:00
73d64e5aff
Renamed 'unmap_header' function to 'close_header'
2016-04-14 15:19:27 +02:00
4cb52e1632
Made the truncating of columns automatic when closing them (note:
...
already the case for AVLs)
2016-04-14 15:13:30 +02:00
9d042f7bd0
Refactored and relocated the set and get functions of all column types,
...
both within and out of the context of a view
2016-04-13 15:10:24 +02:00
d8107533d8
Obiblob_indexer API
2016-04-12 14:53:33 +02:00
966b1325ed
Deleted declaration of obsolete public function
2016-04-11 11:14:20 +02:00
019dfc01b4
Branch to refactor and debug (AVLs bugged)
2016-04-08 15:38:57 +02:00
3681cecb4d
Multiple AVLs with bloom filters (very raw test version)
2016-03-18 11:06:02 +01:00
545ed8111a
Code for tests storing data in multiple AVLs.
...
(note: unretrievable data as implemented)
2016-03-11 15:34:55 +01:00
a8f03248a8
Major update : views
2016-02-18 10:38:51 +01:00
c139367555
DNA sequences and character strings are now handled using AVL trees.
2015-12-11 17:24:44 +01:00
1586956d57
Added the lists of opened columns and arrays in the OBIDMS structure,
...
and a counter in the OBIDMS column structure; fixed some bugs and
created tests for referring columns that are bound to disappear anyway.
2015-12-02 17:32:07 +01:00
b45b496b0e
Major update: new type of columns containing indices referring to lines
...
in other columns
2015-11-29 11:57:07 +01:00
08f2657e18
Increased maximum line count of columns to 1^9
2015-11-23 13:23:18 +01:00
eb12af4da4
Fixed minor error in the documentation of a function.
2015-11-16 15:38:01 +01:00
410e2e02a0
When retrieving the header of a column, the version number of the column
...
wanted can now be provided.
2015-11-10 13:30:10 +01:00
c4b7e579cf
Comments in column headers are now working.
2015-11-10 10:56:45 +01:00
f6ec8ba963
The header size is now directly read in the file when a column or an
...
array is opened.
2015-11-09 17:50:32 +01:00
01bfc14503
The data size in bytes is now stored in the header of a column.
2015-11-09 15:55:00 +01:00
05e3956a0c
Minor changes in code to improve readability (freeing some character
...
strings earlier)
2015-11-09 11:22:51 +01:00
9b066f4327
Major update: obiarrays with columns containing indices referring to
...
character strings.
2015-11-06 17:55:15 +01:00
456551ffeb
obi arrays that don't work because of cython bug passing wrong pointers
2015-11-03 14:22:00 +01:00
