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ed5bb70c80
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CMake: setting compiler higher to avoid conflicts, and linking libopenmp
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2019-05-22 16:26:30 +02:00 |
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22a5ae72d1
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obi clean: not using tsearch library anymore, a simple byte array
instead. A lot more time and memory efficient. Closes #67
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2019-05-19 17:39:53 +02:00 |
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dc88181eeb
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Add a --cobitools3 options to setup.py
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2019-04-12 14:55:05 +02:00 |
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2f60e91d93
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Comment the install of the packages
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2019-04-12 13:03:53 +02:00 |
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7ba27b6a99
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Ask for python 3.7
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2019-04-01 09:08:27 +02:00 |
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d3937e1051
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Add the cmakefile to the manifest
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2019-04-01 09:01:45 +02:00 |
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35eeb07f08
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Build the C src in build/cobject
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2019-04-01 08:52:38 +02:00 |
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3afbbeb7e5
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CMake: made required version 3.10 for ubuntu
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2019-03-31 16:54:05 +02:00 |
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d6056a8e50
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dirty temporary fix for install
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2019-03-31 16:19:05 +02:00 |
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ac47bdce5d
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history: fixed DMS history when multiple inputs
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2019-03-31 15:44:20 +02:00 |
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7f8d1e7196
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C: obi lcs: cleaner progress print
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2019-03-31 15:42:58 +02:00 |
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80068a3c19
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ngsfilter: fixed parsing error
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2019-03-31 15:42:30 +02:00 |
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a3e6b7d913
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obi import: fixed import of View_NUC_SEQS to another DMS
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2019-03-31 15:42:07 +02:00 |
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416c2d7ba0
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Cython: made fasta formatter cleaner
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2019-03-31 15:41:32 +02:00 |
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26fb149efb
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C: made build_ref_db cleaner
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2019-03-31 15:40:13 +02:00 |
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2b8c066f8e
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Cython: added possibility to output in tabular format
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2019-03-31 15:39:38 +02:00 |
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e39c1a7fbf
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Cython: added tab formatter and parser (for obi export)
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2019-03-31 15:38:34 +02:00 |
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6841d879aa
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obi history: fixed a bug when displaying ascii history
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2019-03-31 10:51:52 +02:00 |
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f0ff585455
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Removing trace
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2019-03-30 20:52:54 +01:00 |
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601a2cfd7d
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obi uniq: various fixes...
|
2019-03-30 20:34:53 +01:00 |
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7c518300a0
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C: Views: fixed a bug when creating automatic columns with unformatted
comments
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2019-03-30 20:33:14 +01:00 |
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f16bbca8e2
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obi grep: fixed a bug where -p option didn't work
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2019-03-30 19:10:42 +01:00 |
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173483448a
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Merge commit '3d842ff7'
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2019-03-30 15:29:52 +01:00 |
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52b3a9fc39
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C: taxonomy: fixed a segfault on linux when trying to fclose an unopened
file
|
2019-03-30 15:19:12 +01:00 |
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ce686e9569
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obi import: progress bar fixed when using --only option
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2019-03-30 15:16:57 +01:00 |
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c293cfabbb
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Python: embl parser: fixed a bug preventing taxids from being parsed
|
2019-03-30 15:15:49 +01:00 |
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0847d618d6
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fixed typo
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2019-03-30 15:14:30 +01:00 |
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9fcebd7643
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C: build_reference_db: made some errors more explicit
|
2019-03-30 15:11:49 +01:00 |
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5d842ff7e7
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Clean the manifest of old files
|
2019-03-29 16:58:45 +01:00 |
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3445579251
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remove all the no more needed .cfiles
|
2019-03-29 16:56:58 +01:00 |
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995a66b488
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Add the new script emplacement
|
2019-03-29 16:55:23 +01:00 |
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5007b02cbc
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cleaning stage 2
|
2019-03-29 16:46:17 +01:00 |
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cdd5975e8b
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Cleaning first stage
|
2019-03-29 16:40:36 +01:00 |
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0c466046f4
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Merge branch 'pip-standard-orig-python' into 'master'
The new install version based on classical setup.py
See merge request obitools/obitools3!1
|
2019-03-29 16:25:01 +01:00 |
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2774422224
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Patch the way of installing the obi main command
|
2019-03-29 16:21:28 +01:00 |
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bf62960ee8
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Add some .ignore files
|
2019-03-29 15:52:54 +01:00 |
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9c41b1e9da
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Move and rename the obi.py script
|
2019-03-29 15:45:38 +01:00 |
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3a6d1be795
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remove the old distutils
|
2019-03-29 15:42:45 +01:00 |
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6c52966033
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Switch back to the original python source from the paster branch
|
2019-03-29 15:24:31 +01:00 |
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460187970f
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First version compiling the code correctly
|
2019-03-29 15:22:10 +01:00 |
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52b8008bdc
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Add the location of install
|
2019-03-29 15:21:30 +01:00 |
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6b9da38087
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patch some relative imports
|
2019-03-29 15:19:44 +01:00 |
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ee9947217c
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alignpairedend: fixed the worst memory leak and the handling of the case
where 0 common kmers are found
|
2019-03-29 11:16:25 +01:00 |
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ceaafca427
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ngsfilter: fixed a bug (maybe 2) in the algo for the choice of the
reverse primer when running on unaligned sequences
|
2019-03-29 10:56:17 +01:00 |
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7c2787b6b3
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trying to fix cython difficulties
|
2019-03-26 16:19:55 +01:00 |
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14eca43eac
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Import taxo
|
2019-03-26 16:17:44 +01:00 |
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0b4ea49539
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Convert relative import an delete cfiles
|
2019-03-26 16:14:03 +01:00 |
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cd88c37a7e
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Merge branch 'pip-standard' of git@git.metabarcoding.org:obitools/obitools3.git into pip-standard
|
2019-03-26 15:54:49 +01:00 |
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1095a617a3
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Patch relative import to absolute
|
2019-03-26 15:54:33 +01:00 |
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5a05258fcb
|
fixed relative cython imports to be absolute
|
2019-03-26 15:52:59 +01:00 |
|
