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c5f3fdc295
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Increased maximum element names length in columns
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2017-07-27 19:44:49 +02:00 |
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59dd0a8a8c
|
Standardized and improved the API to create new columns, updated the doc
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2017-07-18 17:34:32 +02:00 |
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|
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1e57bfacb4
|
Fixed some C documentation
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2017-07-17 16:45:08 +02:00 |
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f5e992abbf
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Added a check on the element when setting a value in a column
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2017-07-05 14:49:20 +02:00 |
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537b9847da
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Minor C doc clarification
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2017-04-14 16:23:17 +02:00 |
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431c1c8c6a
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Merge branch 'Eric_new_Python_API' of
git@git.metabarcoding.org:obitools/obitools3.git into
Eric_new_Python_API
Conflicts:
python/obitools3/obidms/_obidms.pxd
python/obitools3/obidms/_obidms.pyx
python/obitools3/obidms/_obidmscolumn_bool.pyx
python/obitools3/obidms/_obidmscolumn_str.pyx
python/obitools3/obidms/_obiseq.pxd
python/obitools3/obidms/_obiseq.pyx
python/obitools3/obidms/_obitaxo.pxd
python/obitools3/obidms/_obitaxo.pyx
python/obitools3/obidms/_obiview.pxd
python/obitools3/obidms/_obiview.pyx
python/obitools3/obidms/_obiview_nuc_seq.pxd
python/obitools3/obidms/_obiview_nuc_seq.pyx
python/obitools3/obidms/_obiview_nuc_seq_qual.pxd
python/obitools3/obidms/_obiview_nuc_seq_qual.pyx
python/obitools3/obidms/capi/obialign.pxd
python/obitools3/obidms/capi/obidmscolumn.pxd
python/obitools3/obidms/capi/obitaxonomy.pxd
python/obitools3/obidms/capi/obiview.pxd
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2017-02-20 14:55:36 +01:00 |
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e50da64ea1
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The elements names when a column contains several elements per line are
now formatted with '\0' as separator and handled in a more optimized way
|
2017-01-31 16:48:06 +01:00 |
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daacd0df76
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Strong refactoring 1
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2016-12-26 13:35:31 +01:00 |
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936be64c34
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Goes with 5e0c9f87 (missing ';' and fixed compilation warnings)
|
2016-12-05 11:18:29 +01:00 |
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852e5488c8
|
The default element names for columns with multiple elements per line
are now "O;1;2;...;n"
|
2016-12-02 17:54:51 +01:00 |
|
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7d022c1a52
|
If the indexer name is NULL when creating a column, it now becomes the
column name
|
2016-11-18 15:56:51 +01:00 |
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8f724f4f8e
|
Some code refactoring
|
2016-11-09 16:48:00 +01:00 |
|
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b408a4f6eb
|
Changed file name limits to adapt to system limits + minor changes
|
2016-09-22 18:05:07 +02:00 |
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38718320f9
|
First version for the association of one column to another. Closes #55
|
2016-07-15 15:38:49 +02:00 |
|
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5d08da46a2
|
Updated the documentation in obidmscolumn.h
|
2016-04-22 17:55:53 +02:00 |
|
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73d64e5aff
|
Renamed 'unmap_header' function to 'close_header'
|
2016-04-14 15:19:27 +02:00 |
|
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4cb52e1632
|
Made the truncating of columns automatic when closing them (note:
already the case for AVLs)
|
2016-04-14 15:13:30 +02:00 |
|
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9d042f7bd0
|
Refactored and relocated the set and get functions of all column types,
both within and out of the context of a view
|
2016-04-13 15:10:24 +02:00 |
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d8107533d8
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Obiblob_indexer API
|
2016-04-12 14:53:33 +02:00 |
|
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966b1325ed
|
Deleted declaration of obsolete public function
|
2016-04-11 11:14:20 +02:00 |
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019dfc01b4
|
Branch to refactor and debug (AVLs bugged)
|
2016-04-08 15:38:57 +02:00 |
|
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3681cecb4d
|
Multiple AVLs with bloom filters (very raw test version)
|
2016-03-18 11:06:02 +01:00 |
|
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545ed8111a
|
Code for tests storing data in multiple AVLs.
(note: unretrievable data as implemented)
|
2016-03-11 15:34:55 +01:00 |
|
|
|
a8f03248a8
|
Major update : views
|
2016-02-18 10:38:51 +01:00 |
|
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c139367555
|
DNA sequences and character strings are now handled using AVL trees.
|
2015-12-11 17:24:44 +01:00 |
|
|
|
1586956d57
|
Added the lists of opened columns and arrays in the OBIDMS structure,
and a counter in the OBIDMS column structure; fixed some bugs and
created tests for referring columns that are bound to disappear anyway.
|
2015-12-02 17:32:07 +01:00 |
|
|
|
b45b496b0e
|
Major update: new type of columns containing indices referring to lines
in other columns
|
2015-11-29 11:57:07 +01:00 |
|
|
|
08f2657e18
|
Increased maximum line count of columns to 1^9
|
2015-11-23 13:23:18 +01:00 |
|
|
|
eb12af4da4
|
Fixed minor error in the documentation of a function.
|
2015-11-16 15:38:01 +01:00 |
|
|
|
410e2e02a0
|
When retrieving the header of a column, the version number of the column
wanted can now be provided.
|
2015-11-10 13:30:10 +01:00 |
|
|
|
c4b7e579cf
|
Comments in column headers are now working.
|
2015-11-10 10:56:45 +01:00 |
|
|
|
f6ec8ba963
|
The header size is now directly read in the file when a column or an
array is opened.
|
2015-11-09 17:50:32 +01:00 |
|
|
|
01bfc14503
|
The data size in bytes is now stored in the header of a column.
|
2015-11-09 15:55:00 +01:00 |
|
|
|
05e3956a0c
|
Minor changes in code to improve readability (freeing some character
strings earlier)
|
2015-11-09 11:22:51 +01:00 |
|
|
|
9b066f4327
|
Major update: obiarrays with columns containing indices referring to
character strings.
|
2015-11-06 17:55:15 +01:00 |
|
|
|
456551ffeb
|
obi arrays that don't work because of cython bug passing wrong pointers
|
2015-11-03 14:22:00 +01:00 |
|
|
|
ecb9d97adb
|
Reorganized the code to have less functions, and the functions to get
and format the creation date of a column are now working.
|
2015-10-15 15:12:45 +02:00 |
|
|
|
0eaa5aa784
|
Major changes : new cython subclasses to handle columns with multiple
elements per line in a more efficient way + now elements_names are
passed as a list + new function to recover only the header of a column
|
2015-10-14 18:05:34 +02:00 |
|
|
|
6877fc4892
|
Fixed a critical bug where values were initialized to NA at the wrong
location when there was multiple elements per line
|
2015-10-12 17:54:36 +02:00 |
|
|
|
ee4c513fd4
|
Fixed a bug where cloning a column would fail if the data was empty
|
2015-10-08 10:36:02 +02:00 |
|
|
|
6ced3c4896
|
new functions to get the creation date of a column
|
2015-10-02 13:47:53 +02:00 |
|
|
|
4b7f2d268b
|
Doxygen documentation corrected and completed.
|
2015-09-30 12:03:46 +02:00 |
|
|
|
7b606c0477
|
Column files now always have a size that is a multiple of the page size,
and the function that enlarges mapped column files tries mapping on next
byte before unmapping/mapping again
|
2015-09-21 15:42:29 +02:00 |
|
|
|
2698022aaf
|
New OBIDMS method to list the columns of an OBIDMS
|
2015-09-15 17:09:31 +02:00 |
|
|
|
f31d8983bb
|
Columns are now enlarged if needed when setting a value
|
2015-09-01 17:38:08 +02:00 |
|
|
|
3b7536c0df
|
The number of lines used is updated in the header when a value is set,
and the iteration on the values of a column is done on the number of
lines used (instead of on the total line count).
|
2015-08-26 17:25:15 +02:00 |
|
|
|
48d10ea17c
|
Functions to truncate and/or close a column
|
2015-08-26 17:01:54 +02:00 |
|
|
|
3f81dc0173
|
Changed the variable name 'nb_elements' to 'nb_lines' for better clarity
|
2015-08-26 10:52:19 +02:00 |
|
|
|
9ad31fddff
|
Added the possibility to clone a column, with or without its data
|
2015-08-26 10:29:07 +02:00 |
|
|
|
1fe2e36d5d
|
Fixed a critical bug where the elements names were not stored correctly
|
2015-08-03 16:11:55 +02:00 |
|
