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4 Commits

Author SHA1 Message Date
Celine Mercier
30e4359c85 LCS alignment: documentation for all the lowest level functions 2016-12-22 17:03:51 +01:00
Celine Mercier
8afb1644e9 Alignment: API rework. 'obi align' is now 'obi lcs', and the results are 
now written to columns automatically created in the output view, all
optimally handled at the C level.
 2016-12-12 11:58:59 +01:00
Celine Mercier
70c49e214a Added the kmer filter to LCS alignments, and now obiblobs containing 
encoded sequences are directly put in int16_t arrays for the alignment
 2016-11-18 16:29:28 +01:00
Celine Mercier
b3c47809da First version of alignment functions (imported from suma* programs) 2016-05-11 16:36:23 +02:00