Commit Graph

22 Commits

Author SHA1 Message Date
e18b762d81 Weird buggy Eclipse commit with nothing changed 2018-10-21 17:35:18 +02:00
f5e992abbf Added a check on the element when setting a value in a column 2017-07-05 14:49:20 +02:00
8f724f4f8e Some code refactoring 2016-11-09 16:48:00 +01:00
2a1ea3ba3f Setting NA values is now handled properly for OBI_SEQ, OBI_STR and
OBI_QUAL columns
2016-06-09 14:22:36 +02:00
fc3641d7ff Read-only AVLs are now hard-linked instead of copied when cloning an AVL
group to make it writable. Also fixed several bugs when handling AVL
groups.
2016-06-03 19:02:46 +02:00
3b59043ea8 Major update: New column type to store sequence qualities. Closes #41 2016-05-20 16:45:22 +02:00
6a8df069ad Indexers are now cloned if needed to modify them after they've been
closed. Obligatory indexers' names now follow the same pattern as other
indexers (columnname_version). Closes #46 and #49.
2016-05-18 13:23:48 +02:00
8ae7644945 First version of quality handling (not working yet) and now it is
checked that a column is writable before enlarging it
2016-05-11 16:38:14 +02:00
b9921e111d Removed unused inclusions and definitions in all column types code 2016-04-22 15:50:19 +02:00
9d042f7bd0 Refactored and relocated the set and get functions of all column types,
both within and out of the context of a view
2016-04-13 15:10:24 +02:00
5ec2d8842e Character string indexer API 2016-04-12 17:21:01 +02:00
d8107533d8 Obiblob_indexer API 2016-04-12 14:53:33 +02:00
375bfcce8a Renamed "Obi_byte_arrays" to "Obiblobs" and moved Obiblob functions to
separate obiblob.c and obiblob.h files
2016-04-12 11:21:14 +02:00
019dfc01b4 Branch to refactor and debug (AVLs bugged) 2016-04-08 15:38:57 +02:00
ff6c27acf2 Implemented the retrieval of values with groups of AVLs 2016-03-25 15:35:16 +01:00
3681cecb4d Multiple AVLs with bloom filters (very raw test version) 2016-03-18 11:06:02 +01:00
545ed8111a Code for tests storing data in multiple AVLs.
(note: unretrievable data as implemented)
2016-03-11 15:34:55 +01:00
a8f03248a8 Major update : views 2016-02-18 10:38:51 +01:00
c139367555 DNA sequences and character strings are now handled using AVL trees. 2015-12-11 17:24:44 +01:00
b45b496b0e Major update: new type of columns containing indices referring to lines
in other columns
2015-11-29 11:57:07 +01:00
9b066f4327 Major update: obiarrays with columns containing indices referring to
character strings.
2015-11-06 17:55:15 +01:00
456551ffeb obi arrays that don't work because of cython bug passing wrong pointers 2015-11-03 14:22:00 +01:00