Commit Graph

21 Commits

Author SHA1 Message Date
53dcbc8ea3 Fixed log to be in str instead of bytes 2019-08-29 18:26:51 +02:00
2b8c066f8e Cython: added possibility to output in tabular format 2019-03-31 15:39:38 +02:00
7e20870719 Added genbank parser 2019-03-15 16:06:27 +01:00
24a63f8732 URIs: URIs built with autocomplete now work too 2019-03-15 10:52:27 +01:00
d88390c6d8 Cython API: when importing a file in a DMS, its length is computed
beforehand for the progress bar
2019-03-13 18:35:32 +01:00
8faabd3ebf Cython, URI: Fixed a bug when using an output URI with just a view name
to use the default DMS
2018-11-02 19:04:27 +01:00
123e5dc0ac Cython URI API: added an argument to only open the DMS and return the
rest as a character string
2018-10-31 14:45:17 +01:00
0a0f0682a9 Better handling of errors and exceptions when new view name already
exists
2018-10-17 19:47:40 +02:00
da0e3d4043 Cython: added full handling of NA strings when importing files 2018-10-17 16:41:15 +02:00
135d3b6e67 Cython: updated the URI decoding to handle outputs other than DMS 2018-10-17 11:21:29 +02:00
c02c15b93f Cython API: URI decoding now returns the character string with the
object path if it could not be opened
2018-07-28 17:00:42 +02:00
62614a8538 Cython API: fixed a bug in URI decoding and option handling where the
quality offset would not be read properly
2018-05-17 15:10:52 +02:00
15e43bb9a1 Cython API: obi import can now import ngsfilter files and tabular files 2018-03-12 18:10:43 +01:00
00993d4215 Cython API: fixed a bug where the quality format would not be read
properly from the configuration values
2018-02-12 14:42:30 +01:00
fb9b219abe Fixed a bug with taxonomy URIs not being read correctly 2017-10-04 16:00:30 +02:00
74f15d1a23 Cython API: Various fixes in input handlers (parsers, openers etc).
Mostly working but not bug-free
2017-08-20 17:37:51 +02:00
407f61a408 Add the possibility to create temporary objects like a temporary
directory and a temporary DMS
2017-07-28 16:33:19 +02:00
b9c65a871f Patch decoding of URL 2017-07-28 12:41:28 +02:00
7112f44fb7 Bug fixes for input handlers, openers, parsers etc. Compiling but not
tested
2017-07-27 19:42:44 +02:00
949e5f9baf Make a first full version of the URI decoder 2017-07-27 16:04:31 +02:00
28259cd88b Beginning of URI decoder -- !!! NOT YET FULLY IMPLEMENTED !!! 2017-07-25 13:05:58 +02:00