switch to version 3.0.0b31

comments

python/obitools3/commands/test.pyx

@@ -23,6 +23,7 @@ from obitools3.dms.capi.obiview cimport NUC_SEQUENCE_COLUMN, \
 import shutil
 import string
 import random
+import sys
 from cpython.exc cimport PyErr_CheckSignals
 
 
@@ -366,7 +367,7 @@ def random_new_view(config, infos, first=False):
             infos['view'] = View_NUC_SEQS.new(infos['dms'], random_unique_name(infos), comments=random_comments(config))   # TODO quality column
         else :
             infos['view'] = View.new(infos['dms'], random_unique_name(infos), comments=random_comments(config))   # TODO quality column
-        
+        infos['view'].write_config(config, "test", infos["command_line"], input_dms_name=[infos['dms'].name], input_view_name=["random"])
     print_test(config, repr(infos['view']))
     if v_to_clone is not None :
         if line_selection is None:
@@ -497,7 +498,8 @@ def run(config):
                                     (b"OBI_SEQ", False): random_seq, (b"OBI_SEQ", True): random_seq_tuples,
                                     (b"OBI_STR", False): random_bytes, (b"OBI_STR", True): random_bytes_tuples
                                   },
-             'tests': [test_set_and_get, test_add_col, test_delete_col, test_col_alias, test_new_view]
+             'tests': [test_set_and_get, test_add_col, test_delete_col, test_col_alias, test_new_view],
+             'command_line': " ".join(sys.argv[1:])
             }
  
     # TODO ???

python/obitools3/dms/view/view.pyx

@@ -7,6 +7,7 @@ cdef dict __VIEW_CLASS__= {}
 from libc.stdlib  cimport malloc
 
 from obitools3.apps.progress cimport ProgressBar  # @UnresolvedImport
+from obitools3.version import version
 
 from ..capi.obiview cimport Alias_column_pair_p, \
                             obi_new_view, \
@@ -184,8 +185,14 @@ cdef class View(OBIWrapper) :
     
     @OBIWrapper.checkIsActive
     def __repr__(self) :
-        cdef str s = "#View name:\n{name:s}\n#Line count:\n{line_count:d}\n#Columns:\n".format(name       = bytes2str(self.name),
-                                                                                                                         line_count = self.line_count)
+        cdef str s
+        if self.read_only:   # can read date   
+            s = "#View name:\n{name:s}\n#Date created:\n{date:s}\n#Line count:\n{line_count:d}\n#Columns:\n".format(name       = bytes2str(self.name),
+                                                                                                                    line_count = self.line_count,
+                                                                                                                    date       = str(bytes2str_object(self.comments["Date created"])))        
+        else:
+            s = "#View name:\n{name:s}\n#Line count:\n{line_count:d}\n#Columns:\n".format(name       = bytes2str(self.name),
+                                                                                          line_count = self.line_count)
         for column_name in self.keys() :
             s = s + repr(self[column_name]) + '\n'
         return s
@@ -434,6 +441,7 @@ cdef class View(OBIWrapper) :
             for i in range(len(input_view_name)):
                 input_str.append(tostr(input_dms_name[i])+"/"+tostr(input_view_name[i]))
         comments["input_str"] = input_str
+        comments["version"] = version
         return bytes2str_object(comments)
 
     

python/obitools3/uri/decode.pyx

@@ -276,9 +276,9 @@ def open_uri(uri,
             iseq = urib
             objclass = bytes
     else:  # TODO update uopen to be able to write? 
-        if urip.path == b'-':
+        if not urip.path or urip.path == b'-':
             file = sys.stdout.buffer
-        elif urip.path :
+        else:
             file = open(urip.path, 'wb')
 
     if file is not None:

python/obitools3/version.py

@@ -1,5 +1,5 @@
 major = 3
 minor = 0
-serial= '0b30'
+serial= '0b31'
 
 version ="%d.%d.%s" % (major,minor,serial)