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The new install version based on classical setup.py #1

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coissac merged 15 commits from pip-standard-orig-python into master 2019-03-29 15:25:03 +00:00
Conversation 2 Commits 15 Files Changed 40 +315 -1190
37 changed files with 315 additions and 1190 deletions
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6
python/obitools3/dms/taxo/taxo.pxd
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@ -1,10 +1,10 @@
#cython: language_level=3
from ..capi.obitaxonomy cimport ecotx_t, OBIDMS_taxonomy_p
from obitools3.dms.capi.obitaxonomy cimport ecotx_t, OBIDMS_taxonomy_p
from ..dms cimport DMS
from obitools3.dms.dms cimport DMS
from ..object cimport OBIWrapper
from obitools3.dms.object cimport OBIWrapper
cdef class Taxonomy(OBIWrapper) :

12
python/obitools3/dms/taxo/taxo.pyx
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@ -1,8 +1,14 @@
#cython: language_level=3
from obitools3.utils cimport str2bytes, bytes2str, tobytes, tostr
from obitools3.dms.capi.obitaxonomy cimport ecotx_t, OBIDMS_taxonomy_p
from ..capi.obitaxonomy cimport obi_taxonomy_exists, \
from obitools3.dms.dms cimport DMS
from obitools3.dms.dms import DMS
from obitools3.dms.object cimport OBIWrapper
from obitools3.dms.capi.obitaxonomy cimport obi_taxonomy_exists, \
obi_read_taxonomy, \
obi_read_taxdump, \
obi_write_taxonomy, \
@ -15,7 +21,9 @@ from ..capi.obitaxonomy cimport obi_taxonomy_exists, \
obi_taxo_get_genus, \
obi_taxo_get_family, \
ecotx_t
from obitools3.dms.capi.obidms cimport OBIDMS_p
from cpython.pycapsule cimport PyCapsule_New, PyCapsule_GetPointer
import tarfile