obitools/obitools3
2
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases 66 Wiki Activity

The new install version based on classical setup.py #1

Merged
coissac merged 15 commits from pip-standard-orig-python into master 2019-03-29 15:25:03 +00:00
Conversation 2 Commits 15 Files Changed 40 +249 -161
17 changed files with 249 additions and 161 deletions
Download Patch File Download Diff File Expand all files Collapse all files
Showing only changes of commit 5a05258fcb - Show all commits

4
python/obitools3/dms/column/typed_column/qual.pxd
View File

@ -1,9 +1,9 @@
# #cython: language_level=3
from ...capi.obitypes cimport index_t
from obitools3.dms.capi.obitypes cimport index_t
from ..column_idx cimport Column_idx, \
from obitools3.dms.column_idx cimport Column_idx, \
Column_multi_elts_idx

17
python/obitools3/dms/column/typed_column/qual.pyx
View File

@ -1,17 +1,22 @@
#cython: language_level=3
from obitools3.dms.capi.obitypes cimport index_t
from obitools3.dms.column_idx cimport Column_idx, \
Column_multi_elts_idx
from obitools3.dms.capi.obierrno cimport obi_errno
from ..column cimport register_column_class
from obitools3.dms.column cimport register_column_class
from ...view.view cimport View
from obitools3.dms.view.view cimport View
from ..column cimport Column
from obitools3.dms.column cimport Column
from obitools3.utils cimport tobytes, bytes2str, \
obi_errno_to_exception
from ...capi.obiview cimport obi_get_qual_char_with_elt_name_and_col_p_in_view, \
from obitools3.dms.capi.obiview cimport obi_get_qual_char_with_elt_name_and_col_p_in_view, \
obi_get_qual_char_with_elt_idx_and_col_p_in_view, \
obi_set_qual_char_with_elt_name_and_col_p_in_view, \
obi_set_qual_char_with_elt_idx_and_col_p_in_view, \
@ -21,9 +26,9 @@ from ...capi.obiview cimport obi_get_qual_char_with_elt_name_and_col_p_in_view,
obi_set_qual_int_with_elt_idx_and_col_p_in_view, \
Obiview_p
from ...capi.obidmscolumn cimport OBIDMS_column_p
from obitools3.dms.capi.obidmscolumn cimport OBIDMS_column_p
from ...capi.obitypes cimport OBI_QUAL, OBIQual_char_NA, OBIQual_int_NA, const_char_p
from obitools3.dms.capi.obitypes cimport OBI_QUAL, OBIQual_char_NA, OBIQual_int_NA, const_char_p
from libc.stdlib cimport malloc, free
from libc.stdint cimport uint8_t

4
python/obitools3/dms/column/typed_column/seq.pxd
View File

@ -1,9 +1,9 @@
# #cython: language_level=3
from ...capi.obitypes cimport index_t
from obitools3.dms.capi.obitypes cimport index_t
from ..column_idx cimport Column_idx, \
from obitools3.dms.column_idx cimport Column_idx, \
Column_multi_elts_idx

17
python/obitools3/dms/column/typed_column/seq.pyx
View File

@ -1,17 +1,20 @@
#cython: language_level=3
from obitools3.dms.capi.obitypes cimport index_t
from obitools3.dms.column_idx cimport Column_idx, \
Column_multi_elts_idx
from obitools3.dms.capi.obierrno cimport obi_errno
from ..column cimport register_column_class
from obitools3.dms.column.column cimport Column, register_column_class
from ...view.view cimport View
from ..column cimport Column
from obitools3.dms.view.view cimport View
from obitools3.utils cimport tobytes, \
obi_errno_to_exception
from ...capi.obiview cimport obi_get_seq_with_elt_name_and_col_p_in_view, \
from obitools3.dms.capi.obiview cimport obi_get_seq_with_elt_name_and_col_p_in_view, \
obi_get_seq_with_elt_idx_and_col_p_in_view, \
obi_set_seq_with_elt_name_and_col_p_in_view, \
obi_set_seq_with_elt_idx_and_col_p_in_view, \
@ -21,9 +24,9 @@ from ...capi.obiview cimport obi_get_seq_with_elt_name_and_col_p_in_view, \
obi_set_array_with_col_p_in_view, \
Obiview_p
from ...capi.obidmscolumn cimport OBIDMS_column_p
from obitools3.dms.capi.obidmscolumn cimport OBIDMS_column_p
from ...capi.obitypes cimport OBI_SEQ, \
from obitools3.dms.capi.obitypes cimport OBI_SEQ, \
OBISeq_NA, \
OBITuple_NA

4
python/obitools3/dms/column/typed_column/str.pxd
View File

@ -1,9 +1,9 @@
# #cython: language_level=3
from ...capi.obitypes cimport index_t
from obitools3.dms.capi.obitypes cimport index_t
from ..column_idx cimport Column_idx, \
from obitools3.dms.column_idx cimport Column_idx, \
Column_multi_elts_idx

36
python/obitools3/dms/column/typed_column/str.pyx
View File

@ -1,30 +1,34 @@
#cython: language_level=3
from obitools3.dms.capi.obitypes cimport index_t
from obitools3.dms.column_idx cimport Column_idx, \
Column_multi_elts_idx
from obitools3.dms.capi.obierrno cimport obi_errno
from ..column cimport register_column_class
from obitools3.dms.column.column cimport Column, register_column_class
from ...view.view cimport View
from ..column cimport Column
from obitools3.dms.view.view cimport View
from obitools3.utils cimport tobytes, \
obi_errno_to_exception
from ...capi.obiview cimport obi_get_str_with_elt_name_and_col_p_in_view, \
obi_get_str_with_elt_idx_and_col_p_in_view, \
obi_set_str_with_elt_name_and_col_p_in_view, \
obi_set_str_with_elt_idx_and_col_p_in_view, \
obi_get_array_with_col_p_in_view, \
obi_set_array_with_col_p_in_view, \
Obiview_p
from obitools3.dms.capi.obiview cimport obi_get_str_with_elt_name_and_col_p_in_view, \
obi_get_str_with_elt_idx_and_col_p_in_view, \
obi_set_str_with_elt_name_and_col_p_in_view, \
obi_set_str_with_elt_idx_and_col_p_in_view, \
obi_get_array_with_col_p_in_view, \
obi_set_array_with_col_p_in_view, \
Obiview_p
from ...capi.obidmscolumn cimport OBIDMS_column_p
from obitools3.dms.capi.obidmscolumn cimport OBIDMS_column_p
from ...capi.obitypes cimport OBI_STR, \
OBIStr_NA, \
OBITuple_NA, \
const_char_p
from obitools3.dms.capi.obitypes cimport OBI_STR, \
OBIStr_NA, \
OBITuple_NA, \
const_char_p
from libc.stdint cimport int32_t
from libc.stdlib cimport calloc, free