obitools3

libecoPCR

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

libjson

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

_sse.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

.gitignore

Add some .ignore files

2019-03-29 15:52:54 +01:00

array_indexer.c

Fixed a bug in the array indexer where the value's length was not

2018-11-27 16:12:41 +01:00

array_indexer.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

bloom.c

Commented #ifdef directive for detect_bucket_size function because it

2016-04-27 10:24:40 +02:00

bloom.h

Updated prototypes with no arguments with a void argument as suggested

2018-10-17 12:00:40 +02:00

build_reference_db.c

C build ref db: fixed 2 bugs when setting arrays: size of an element in

2018-12-09 19:13:06 +01:00

build_reference_db.h

C: new function to build a reference database with LCA and score

2018-11-27 15:56:50 +01:00

char_str_indexer.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

char_str_indexer.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

CMakeLists.txt

Add the location of install

2019-03-29 15:21:30 +01:00

crc64.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

crc64.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

dna_seq_indexer.c

minor fixes and comments

2018-11-19 11:23:54 +01:00

dna_seq_indexer.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

encode.c

C: Added a function to get a nucleotide at a specific index in an

2019-01-21 17:18:02 +01:00

encode.h

C: Added a function to get a nucleotide at a specific index in an

2019-01-21 17:18:02 +01:00

hashtable.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

hashtable.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

kmer_similarity.c

alignpairedend: fixed the worst memory leak and the handling of the case

2019-03-29 11:16:25 +01:00

kmer_similarity.h

alignpairedend: fixed the worst memory leak and the handling of the case

2019-03-29 11:16:25 +01:00

linked_list.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

linked_list.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

murmurhash2.c

Renamed MurmurHash2.c file to murmurhash2.c as it could be a problem

2016-04-26 14:29:17 +02:00

murmurhash2.h

Little annotations for the murmur hash function.

2016-04-21 13:53:29 +02:00

obi_clean.c

minor fixes and comments

2018-11-19 11:23:54 +01:00

obi_clean.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obi_ecopcr.c

ecoPCR: fixed amplicon length computation bug

2019-02-06 18:11:20 +01:00

obi_ecopcr.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obi_ecotag.c

New command and C functions: obi ecotag

2018-12-09 19:19:32 +01:00

obi_ecotag.h

New command and C functions: obi ecotag

2018-12-09 19:19:32 +01:00

obi_lcs.c

C obi_lcs: fixed checking for identical sequences when aligning 2

2018-12-09 19:16:44 +01:00

obi_lcs.h

C obi_lcs: updated deprecated column names and associated comments

2018-12-09 19:17:13 +01:00

obiavl.c

AVLs: AVLs in a group are not unmapped and remapped constantly anymore

2018-11-19 11:19:07 +01:00

obiavl.h

AVLs: made maximum number of nodes per AVL 5 millions, as this combined

2018-11-19 11:22:26 +01:00

obiblob_indexer.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obiblob_indexer.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obiblob.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obiblob.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidebug.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidms_taxonomy.c

C: taxonomy: fixed a bug when checking for root node

2019-01-21 17:23:25 +01:00

obidms_taxonomy.h

C, taxonomy: new function to get the lowest common ancestor of two taxa

2018-11-27 16:00:29 +01:00

obidms.c

added math.h import where needed

2019-03-13 11:17:25 +01:00

obidms.h

Removed a deprecated element from the DMS structure

2018-11-07 13:36:08 +01:00

obidmscolumn_array.c

Fixed a bug in the array indexer where the value's length was no

2018-11-27 16:18:34 +01:00

obidmscolumn_array.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_blob.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_blob.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_bool.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_bool.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_char.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_char.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_float.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_float.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_idx.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_idx.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_int.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_int.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_qual.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_qual.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_seq.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_seq.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_str.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_str.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn.c

Fixed a bug when creating a column and checking the comments string if

2019-03-07 15:09:59 +01:00

obidmscolumn.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumndir.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumndir.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obierrno.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obierrno.h

New command and C functions: obi ecotag

2018-12-09 19:19:32 +01:00

obilittlebigman.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obilittlebigman.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obitypes.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obitypes.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obiview.c

added math.h import where needed

2019-03-13 11:17:25 +01:00

obiview.h

C, views: made 'view_exists' function public (now 'obi_view_exists')

2018-11-27 16:20:30 +01:00

sse_banded_LCS_alignment.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

sse_banded_LCS_alignment.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

uint8_indexer.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

uint8_indexer.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

upperband.c

C alignment filter: added a check for sequences not being equal when the

2018-12-09 19:14:51 +01:00

upperband.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

utils.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

utils.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00