obitools3

libecoPCR

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

libjson

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

_sse.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

.gitignore

Add some .ignore files

2019-03-29 15:52:54 +01:00

array_indexer.c

Fixed a bug in the array indexer where the value's length was not

2018-11-27 16:12:41 +01:00

array_indexer.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

bloom.c

Commented #ifdef directive for detect_bucket_size function because it

2016-04-27 10:24:40 +02:00

bloom.h

Updated prototypes with no arguments with a void argument as suggested

2018-10-17 12:00:40 +02:00

build_reference_db.c

fixes #61 : now reading merged taxids information when building a

2019-08-19 12:30:56 +02:00

build_reference_db.h

C: new function to build a reference database with LCA and score

2018-11-27 15:56:50 +01:00

char_str_indexer.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

char_str_indexer.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

CMakeLists.txt

CMake: setting compiler higher to avoid conflicts, and linking libopenmp

2019-05-22 16:26:30 +02:00

crc64.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

crc64.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

dna_seq_indexer.c

minor fixes and comments

2018-11-19 11:23:54 +01:00

dna_seq_indexer.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

encode.c

C: Added a function to get a nucleotide at a specific index in an

2019-01-21 17:18:02 +01:00

encode.h

C: Added a function to get a nucleotide at a specific index in an

2019-01-21 17:18:02 +01:00

hashtable.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

hashtable.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

kmer_similarity.c

ngsfilter and alignpairedend: paired-end reads are now correctly

2019-07-23 18:56:51 +02:00

kmer_similarity.h

ngsfilter and alignpairedend: paired-end reads are now correctly

2019-07-23 18:56:51 +02:00

linked_list.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

linked_list.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

murmurhash2.c

Renamed MurmurHash2.c file to murmurhash2.c as it could be a problem

2016-04-26 14:29:17 +02:00

murmurhash2.h

Little annotations for the murmur hash function.

2016-04-21 13:53:29 +02:00

obi_clean.c

obiclean parallelized

2019-06-20 19:44:04 +02:00

obi_clean.h

obiclean parallelized

2019-06-20 19:44:04 +02:00

obi_ecopcr.c

ecoPCR: fixed amplicon length computation bug

2019-02-06 18:11:20 +01:00

obi_ecopcr.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obi_ecotag.c

Minor fixes

2019-08-18 19:45:53 +02:00

obi_ecotag.h

New command and C functions: obi ecotag

2018-12-09 19:19:32 +01:00

obi_lcs.c

C: obi lcs: cleaner progress print

2019-03-31 15:42:58 +02:00

obi_lcs.h

C obi_lcs: updated deprecated column names and associated comments

2018-12-09 19:17:13 +01:00

obiavl.c

AVLs: AVLs in a group are not unmapped and remapped constantly anymore

2018-11-19 11:19:07 +01:00

obiavl.h

AVLs: made maximum number of nodes per AVL 5 millions, as this combined

2018-11-19 11:22:26 +01:00

obiblob_indexer.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obiblob_indexer.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obiblob.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obiblob.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidebug.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidms_taxonomy.c

C: taxonomy: fixed a segfault on linux when trying to fclose an unopened

2019-03-30 15:19:12 +01:00

obidms_taxonomy.h

C, taxonomy: new function to get the lowest common ancestor of two taxa

2018-11-27 16:00:29 +01:00

obidms.c

added math.h import where needed

2019-03-13 11:17:25 +01:00

obidms.h

Removed a deprecated element from the DMS structure

2018-11-07 13:36:08 +01:00

obidmscolumn_array.c

Fixed a bug in the array indexer where the value's length was no

2018-11-27 16:18:34 +01:00

obidmscolumn_array.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_blob.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_blob.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_bool.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_bool.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_char.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_char.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_float.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_float.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_idx.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_idx.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_int.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_int.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_qual.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_qual.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_seq.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_seq.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_str.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn_str.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumn.c

Fixed a bug where a directory was not closed properly resulting in errno

2019-08-18 19:46:52 +02:00

obidmscolumn.h

Minor fixes

2019-08-18 19:45:53 +02:00

obidmscolumndir.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obidmscolumndir.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obierrno.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obierrno.h

New command and C functions: obi ecotag

2018-12-09 19:19:32 +01:00

obilittlebigman.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obilittlebigman.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obitypes.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obitypes.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

obiview.c

C: Views: fixed a bug when creating automatic columns with unformatted

2019-03-30 20:33:14 +01:00

obiview.h

Minor fixes

2019-08-18 19:45:53 +02:00

sse_banded_LCS_alignment.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

sse_banded_LCS_alignment.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

uint8_indexer.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

uint8_indexer.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

upperband.c

updated a comment

2019-07-23 19:03:24 +02:00

upperband.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

utils.c

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

utils.h

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00