65 lines
1.8 KiB
Python
Executable File
65 lines
1.8 KiB
Python
Executable File
#!/usr/local/bin/python3.5
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'''
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obi -- OBITools3
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obi is a package for the management of analyses and data in DNA metabarcoding
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@author: Celine Mercier
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@license: CeCILL-V2
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@contact: celine.mercier@metabarcoding.org
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'''
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default_config = { 'software' : "The OBITools 3",
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'log' : False,
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'loglevel' : 'INFO',
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'inputURI' : None,
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'outputURI' : None,
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'defaultdms' : None,
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'inputview' : None,
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'outputview' : None,
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'skip' : 0,
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'only' : None,
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'fileformat' : None,
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'skiperror' : True,
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'qualityformat' : b'sanger',
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'offset' : -1,
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'noquality' : False,
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'seqtype' : b'nuc',
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"header" : False,
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"sep" : None,
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"quote" : [b"'",b'"'],
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"dec" : b".",
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"nastring" : b"NA",
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"stripwhite" : True,
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"blanklineskip" : True,
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"commentchar" : b"#",
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"nocreatedms" : False
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}
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root_config_name='obi'
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from obitools3.apps.config import getConfiguration # @UnresolvedImport
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from obitools3.version import version
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__all__ = []
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__version__ = version
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__date__ = '2019-09-22'
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__updated__ = '2019-09-22'
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DEBUG = 1
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TESTRUN = 0
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PROFILE = 0
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if __name__ =="__main__":
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config = getConfiguration(root_config_name,
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default_config)
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config[root_config_name]['module'].run(config)
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