obitools3

libecoPCR

New command: obi ecopcr

2018-07-28 17:13:45 +02:00

_sse.h

First version of alignment functions (imported from suma* programs)

2016-05-11 16:36:23 +02:00

array_indexer.c

Added tuple columns containing immutable indexed data arrays of any type

2017-11-15 13:48:59 +01:00

array_indexer.h

Added tuple columns containing immutable indexed data arrays of any type

2017-11-15 13:48:59 +01:00

bloom.c

Commented #ifdef directive for detect_bucket_size function because it

2016-04-27 10:24:40 +02:00

bloom.h

Fixed a typo in doc

2017-08-20 17:20:13 +02:00

char_str_indexer.c

Major update: New column type to store sequence qualities. Closes #41

2016-05-20 16:45:22 +02:00

char_str_indexer.h

Major update: New column type to store sequence qualities. Closes #41

2016-05-20 16:45:22 +02:00

crc64.c

Fixed minor warning

2016-03-25 16:11:52 +01:00

crc64.h

Short doc for crc function

2016-04-21 13:23:52 +02:00

dna_seq_indexer.c

Major update: New column type to store sequence qualities. Closes #41

2016-05-20 16:45:22 +02:00

dna_seq_indexer.h

Documentation for DNA sequence indexing functions

2016-04-21 13:36:51 +02:00

encode.c

Various non-important fixes and comments

2018-07-28 17:07:17 +02:00

encode.h

C functions to detect IUPAC sequences

2017-07-05 17:26:03 +02:00

hashtable.c

Major update: Column aliases. Columns are now identified in the context

2016-08-01 18:25:30 +02:00

hashtable.h

Major update: Column aliases. Columns are now identified in the context

2016-08-01 18:25:30 +02:00

linked_list.c

minor comments and changes

2017-07-27 19:46:34 +02:00

linked_list.h

minor comments and changes

2017-07-27 19:46:34 +02:00

murmurhash2.c

Renamed MurmurHash2.c file to murmurhash2.c as it could be a problem

2016-04-26 14:29:17 +02:00

murmurhash2.h

Little annotations for the murmur hash function.

2016-04-21 13:53:29 +02:00

obi_align.c

Columns: elements names informations are now kept in a memory arena of

2017-12-13 22:46:50 +01:00

obi_align.h

Fixed missing email address

2017-02-07 17:14:10 +01:00

obi_clean.c

Various non-important fixes and comments

2018-07-28 17:07:17 +02:00

obi_clean.h

Various non-important fixes and comments

2018-07-28 17:07:17 +02:00

obi_ecopcr.c

New command: obi ecopcr

2018-07-28 17:13:45 +02:00

obi_ecopcr.h

New command: obi ecopcr

2018-07-28 17:13:45 +02:00

obiavl.c

Forgot a ;

2017-08-20 17:56:18 +02:00

obiavl.h

Various non-important fixes and comments

2018-07-28 17:07:17 +02:00

obiblob_indexer.c

Changed the inline functions syntax, which should make it compatible

2016-11-18 16:21:26 +01:00

obiblob_indexer.h

Changed the inline functions syntax, which should make it compatible

2016-11-18 16:21:26 +01:00

obiblob.c

BUG FIX: seemingly identical obiblobs would have different hash values

2017-08-20 17:25:15 +02:00

obiblob.h

Major update: New column type to store sequence qualities. Closes #41

2016-05-20 16:45:22 +02:00

obidebug.h

Doxygen documentation corrected and completed.

2015-09-30 12:03:46 +02:00

obidms_taxonomy.c

Taxonomy: added functions to check if a taxonomy already exists in a

2018-07-28 16:48:11 +02:00

obidms_taxonomy.h

Taxonomy: added functions to check if a taxonomy already exists in a

2018-07-28 16:48:11 +02:00

obidms.c

Columns: elements names informations are now kept in a memory arena of

2017-12-13 22:46:50 +01:00

obidms.h

OBIDMS: Opened DMS now have a counter associated so that DMS are not

2017-11-24 17:58:47 +01:00

obidmscolumn_array.c

Added tuple columns containing immutable indexed data arrays of any type

2017-11-15 13:48:59 +01:00

obidmscolumn_array.h

Added tuple columns containing immutable indexed data arrays of any type

2017-11-15 13:48:59 +01:00

obidmscolumn_blob.c

Functions to get obiblobs through views

2016-11-18 15:59:50 +01:00

obidmscolumn_blob.h

Functions to get obiblobs through views

2016-11-18 15:59:50 +01:00

obidmscolumn_bool.c

Added a check on the element when setting a value in a column

2017-07-05 14:49:20 +02:00

obidmscolumn_bool.h

Refactored and relocated the set and get functions of all column types,

2016-04-13 15:10:24 +02:00

obidmscolumn_char.c

Added a check on the element when setting a value in a column

2017-07-05 14:49:20 +02:00

obidmscolumn_char.h

Refactored and relocated the set and get functions of all column types,

2016-04-13 15:10:24 +02:00

obidmscolumn_float.c

Added a check on the element when setting a value in a column

2017-07-05 14:49:20 +02:00

obidmscolumn_float.h

Refactored and relocated the set and get functions of all column types,

2016-04-13 15:10:24 +02:00

obidmscolumn_idx.c

Added a check on the element when setting a value in a column

2017-07-05 14:49:20 +02:00

obidmscolumn_idx.h

Finished adding all the functions to directly set and get indices in

2016-11-30 11:08:11 +01:00

obidmscolumn_int.c

Added a check on the element when setting a value in a column

2017-07-05 14:49:20 +02:00

obidmscolumn_int.h

Fixed error in documentation

2016-11-28 10:55:23 +01:00

obidmscolumn_qual.c

Added possibility to specify the offset for encoding and decoding

2017-07-27 19:24:41 +02:00

obidmscolumn_qual.h

Added possibility to specify the offset for encoding and decoding

2017-07-27 19:24:41 +02:00

obidmscolumn_seq.c

Added a check on the element when setting a value in a column

2017-07-05 14:49:20 +02:00

obidmscolumn_seq.h

Updated the documentation for OBI_SEQ columns

2016-04-22 15:58:20 +02:00

obidmscolumn_str.c

Added a check on the element when setting a value in a column

2017-07-05 14:49:20 +02:00

obidmscolumn_str.h

Updated the documentation for OBI_STR columns

2016-04-22 15:59:32 +02:00

obidmscolumn.c

C API: Added a function to set an entire column to a specified (atomic)

2018-05-17 15:59:16 +02:00

obidmscolumn.h

Various non-important fixes and comments

2018-07-28 17:07:17 +02:00

obidmscolumndir.c

Views are now rollbacked if an error occurs, and unfinished views and

2017-10-26 18:58:48 +02:00

obidmscolumndir.h

Views are now rollbacked if an error occurs, and unfinished views and

2017-10-26 18:58:48 +02:00

obierrno.c

closes #13 , obi_errno is initialized to 0

2015-10-02 13:46:34 +02:00

obierrno.h

New command: obi ecopcr

2018-07-28 17:13:45 +02:00

obilittlebigman.c

Merge branch 'Eric_new_Python_API' of

2017-02-20 14:55:36 +01:00

obilittlebigman.h

Doxygen documentation corrected and completed.

2015-09-30 12:03:46 +02:00

obitypes.c

First version of quality handling (not working yet) and now it is

2016-05-11 16:38:14 +02:00

obitypes.h

Added tuple columns containing immutable indexed data arrays of any type

2017-11-15 13:48:59 +01:00

obiview.c

More explicit predicate error when checking that sequences and qualities

2018-08-08 19:51:05 +02:00

obiview.h

Views: added macro for taxid column name

2018-07-28 17:10:11 +02:00

sse_banded_LCS_alignment.c

LCS alignment: it is now checked that sequences are not longer than what

2016-12-22 17:06:23 +01:00

sse_banded_LCS_alignment.h

LCS alignment: documentation for all the lowest level functions

2016-12-22 17:03:51 +01:00

uint8_indexer.c

Major update: New column type to store sequence qualities. Closes #41

2016-05-20 16:45:22 +02:00

uint8_indexer.h

Major update: New column type to store sequence qualities. Closes #41

2016-05-20 16:45:22 +02:00

upperband.c

Committing minor comments before merging branch with master

2017-07-06 10:56:39 +02:00

upperband.h

Added function to build kmer table for 2 columns, and fixed bug (with

2016-12-16 19:10:18 +01:00

utils.c

Implemented functions to build reverse complement sequences

2018-01-05 16:08:36 +01:00

utils.h

Implemented functions to build reverse complement sequences

2018-01-05 16:08:36 +01:00