Files
obitools3/python/obitools3/utils.pxd
mercierc 3e45c34491 import: now imports and adds taxids for SILVA and RDP files, added
import of lists, fixed skipping of errors (was not overwriting), and
fixed --no-progress-bar option
2021-06-01 09:21:07 +12:00

25 lines
839 B
Cython
Executable File

#cython: language_level=3
from obitools3.dms.capi.obitypes cimport obitype_t, index_t
cpdef bytes format_uniq_pattern(bytes format)
cpdef int count_entries(file, bytes format, bint header)
cdef obi_errno_to_exception(index_t line_nb=*, object elt_id=*, str error_message=*)
cdef bytes str2bytes(str string)
cdef str bytes2str(bytes string)
cdef bytes tobytes(object string)
cdef str tostr(object string)
cdef object bytes2str_object(object value)
cdef object str2bytes_object(object value)
cdef object clean_empty_values_from_object(object value, exclude=*)
cdef obitype_t get_obitype_single_value(object value)
cdef obitype_t update_obitype(obitype_t obitype, object new_value)
cdef obitype_t get_obitype_iterable_value(object value, type t)
cdef obitype_t get_obitype(object value)
cdef object __etag__(bytes x, bytes nastring=*)