obitools/obitools3
2
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases 66 Wiki Activity
Files
5e3c41b058b320f5f2524d11b1f134864da30e5a
obitools3/src
History
Celine Mercier 5e3c41b058 C: Fixed opened DIR leak
2019-09-04 16:48:13 +02:00
..
libecoPCR
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
libjson
C: Json comments: added an obi_read_comment function to read one value
2019-08-31 18:28:51 +02:00
_sse.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
.gitignore
Add some .ignore files
2019-03-29 15:52:54 +01:00
array_indexer.c
C: fixed remaining memory bug in array indexer
2019-09-01 17:24:57 +02:00
array_indexer.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
bloom.c
Commented #ifdef directive for detect_bucket_size function because it
2016-04-27 10:24:40 +02:00
bloom.h
Updated prototypes with no arguments with a void argument as suggested
2018-10-17 12:00:40 +02:00
build_reference_db.c
Various display improvements
2019-09-03 21:46:39 +02:00
build_reference_db.h
C: build_ref_db: now adds a comment with the threshold used to build the
2019-08-31 18:29:40 +02:00
char_str_indexer.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
char_str_indexer.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
CMakeLists.txt
CMake: setting compiler higher to avoid conflicts, and linking libopenmp
2019-05-22 16:26:30 +02:00
crc64.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
crc64.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
dna_seq_indexer.c
minor fixes and comments
2018-11-19 11:23:54 +01:00
dna_seq_indexer.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
encode.c
C: Added a function to get a nucleotide at a specific index in an
2019-01-21 17:18:02 +01:00
encode.h
C: Added a function to get a nucleotide at a specific index in an
2019-01-21 17:18:02 +01:00
hashtable.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
hashtable.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
kmer_similarity.c
ngsfilter and alignpairedend: paired-end reads are now correctly
2019-07-23 18:56:51 +02:00
kmer_similarity.h
ngsfilter and alignpairedend: paired-end reads are now correctly
2019-07-23 18:56:51 +02:00
linked_list.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
linked_list.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
murmurhash2.c
Renamed MurmurHash2.c file to murmurhash2.c as it could be a problem
2016-04-26 14:29:17 +02:00
murmurhash2.h
Little annotations for the murmur hash function.
2016-04-21 13:53:29 +02:00
obi_clean.c
obiclean parallelized
2019-06-20 19:44:04 +02:00
obi_clean.h
obiclean parallelized
2019-06-20 19:44:04 +02:00
obi_ecopcr.c
Various display improvements
2019-09-03 21:46:39 +02:00
obi_ecopcr.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obi_ecotag.c
Various display improvements
2019-09-03 21:46:39 +02:00
obi_ecotag.h
New command and C functions: obi ecotag
2018-12-09 19:19:32 +01:00
obi_lcs.c
C: obi lcs: cleaner progress print
2019-03-31 15:42:58 +02:00
obi_lcs.h
C obi_lcs: updated deprecated column names and associated comments
2018-12-09 19:17:13 +01:00
obiavl.c
C: optimized dir opening
2019-08-29 16:35:10 +02:00
obiavl.h
C: optimized dir opening
2019-08-29 16:35:10 +02:00
obiblob_indexer.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obiblob_indexer.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obiblob.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obiblob.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidebug.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidms_taxonomy.c
C: taxonomy: fixed a segfault on linux when trying to fclose an unopened
2019-03-30 15:19:12 +01:00
obidms_taxonomy.h
C, taxonomy: new function to get the lowest common ancestor of two taxa
2018-11-27 16:00:29 +01:00
obidms.c
C: optimized dir opening
2019-08-29 16:35:10 +02:00
obidms.h
Removed a deprecated element from the DMS structure
2018-11-07 13:36:08 +01:00
obidmscolumn_array.c
Fixed a bug in the array indexer where the value's length was no
2018-11-27 16:18:34 +01:00
obidmscolumn_array.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_blob.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_blob.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_bool.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_bool.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_char.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_char.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_float.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_float.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_idx.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_idx.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_int.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_int.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_qual.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_qual.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_seq.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_seq.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_str.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_str.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn.c
C: Fixed opened DIR leak
2019-09-04 16:48:13 +02:00
obidmscolumn.h
Minor fixes
2019-08-18 19:45:53 +02:00
obidmscolumndir.c
C: fixed a bug when opening or creating a new column directory where the
2019-09-04 13:16:28 +02:00
obidmscolumndir.h
C: made it so column DIR* are not kept open to handle very large DMS
2019-09-04 12:55:21 +02:00
obierrno.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obierrno.h
New command and C functions: obi ecotag
2018-12-09 19:19:32 +01:00
obilittlebigman.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obilittlebigman.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obitypes.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obitypes.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obiview.c
C: Views: fixed a bug when creating automatic columns with unformatted
2019-03-30 20:33:14 +01:00
obiview.h
obi uniq: various improvements and fixes #66
2019-08-27 20:27:36 +02:00
sse_banded_LCS_alignment.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
sse_banded_LCS_alignment.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
uint8_indexer.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
uint8_indexer.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
upperband.c
updated a comment
2019-07-23 19:03:24 +02:00
upperband.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
utils.c
C: optimized dir opening
2019-08-29 16:35:10 +02:00
utils.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00