34 lines
1.1 KiB
Cython
Executable File
34 lines
1.1 KiB
Cython
Executable File
#cython: language_level=3
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from ..capi.obitaxonomy cimport ecotx_t, OBIDMS_taxonomy_p
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from ..dms cimport DMS
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from ..object cimport OBIWrapper
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cdef class Taxonomy(OBIWrapper) :
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cdef bytes _name
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cdef DMS _dms
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cdef list _ranks
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cdef dict _name_dict
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cdef inline OBIDMS_taxonomy_p pointer(self)
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cdef fill_name_dict(self)
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cpdef Taxon get_taxon_by_idx(self, int idx)
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cpdef Taxon get_taxon_by_taxid(self, int taxid)
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cpdef Taxon get_taxon_by_name(self, object taxon_name, object restricting_taxid=*)
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cpdef write(self, object prefix, bint update=*)
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cpdef int add_taxon(self, object name, object rank_name, int parent_taxid, int min_taxid=*)
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cpdef object get_species(self, int taxid)
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cpdef object get_genus(self, int taxid)
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cpdef object get_family(self, int taxid)
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cpdef bytes get_scientific_name(self, int taxid)
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cpdef bytes get_rank(self, int taxid)
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cpdef object get_taxon_at_rank(self, int taxid, object rank)
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cdef class Taxon :
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cdef ecotx_t* _pointer
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cdef Taxonomy _tax |