obitools/obitools3
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6bfd7441f374bfc11cf17f216189274d3fbf1285
obitools3/python/obitools3/commands
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Celine Mercier 6bfd7441f3 ngsfilter: fixed sequence cutting when dealing with unaligned sequences. 
Could use optimization
2019-12-12 17:01:31 +01:00
..
__init__.py
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
.gitignore
Cleaning first stage
2019-03-29 16:40:36 +01:00
align.pxd
better cfiles
2019-02-19 14:11:29 +01:00
align.pyx
Fixed a bug when sending a DMS path to a C function from Cython
2019-08-18 19:43:51 +02:00
alignpairedend.pxd
Alignpairedend: added alignment using shifting with best kmer similarity
2019-01-21 17:30:46 +01:00
alignpairedend.pyx
Added signal catching and handling in C and Cython
2019-09-21 16:47:22 +02:00
annotate.pyx
Added signal catching and handling in C and Cython
2019-09-21 16:47:22 +02:00
build_ref_db.pyx
Fixed a bug when sending a DMS path to a C function from Cython
2019-08-18 19:43:51 +02:00
clean_dms.pyx
new command: clean_dms to clean and unlock a DMS after a bad exit.
2019-09-20 20:38:25 +02:00
clean.pyx
Fixed a bug when sending a DMS path to a C function from Cython
2019-08-18 19:43:51 +02:00
count.pyx
Added signal catching and handling in C and Cython
2019-09-21 16:47:22 +02:00
ecopcr.pyx
Fixed a bug when sending a DMS path to a C function from Cython
2019-08-18 19:43:51 +02:00
ecotag.pyx
ecotag: trying to use a threshold lower than the ref db threshold now
2019-09-15 19:27:47 +02:00
export.pyx
Added signal catching and handling in C and Cython
2019-09-21 16:47:22 +02:00
grep.pyx
obi grep: now able to convert str to bytes in predicate expressions
2019-09-22 16:44:45 +02:00
head.pyx
Added signal catching and handling in C and Cython
2019-09-21 16:47:22 +02:00
history.pyx
obi history: fixed a bug when displaying ascii history
2019-03-31 10:51:52 +02:00
import.pyx
obi import: fixed bug when importing a taxdump
2019-09-22 16:45:30 +02:00
less.pyx
obi less: now actually behaves like less
2019-09-21 18:29:12 +02:00
ls.pyx
obi import: importing a view to a DMS now uses the C API (more efficient
2019-09-21 12:49:29 +02:00
ngsfilter.pyx
ngsfilter: fixed sequence cutting when dealing with unaligned sequences.
2019-12-12 17:01:31 +01:00
sort.pyx
Added signal catching and handling in C and Cython
2019-09-21 16:47:22 +02:00
stats.pyx
obi stats: fixed bug with None values
2019-09-22 20:21:53 +02:00
tail.pyx
Added signal catching and handling in C and Cython
2019-09-21 16:47:22 +02:00
test.pyx
Added signal catching and handling in C and Cython
2019-09-21 16:47:22 +02:00
uniq.pxd
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
uniq.pyx
Added signal catching and handling in C and Cython
2019-09-21 16:47:22 +02:00