Celine Mercier 773b36ec37 obi import: fixed the import of old obitools files with premerged ...

informations, and other minor improvements

2020-05-07 17:03:04 +02:00

..

__init__.py

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

.gitignore

Cleaning first stage

2019-03-29 16:40:36 +01:00

align.pxd

better cfiles

2019-02-19 14:11:29 +01:00

align.pyx

all commands (almost): cleaner DMS closing at the end

2020-04-12 17:31:58 +02:00

alignpairedend.pxd

Alignpairedend: added alignment using shifting with best kmer similarity

2019-01-21 17:30:46 +01:00

alignpairedend.pyx

all commands (almost): cleaner DMS closing at the end

2020-04-12 17:31:58 +02:00

annotate.pyx

obi annotate: fixed annotation at ranks

2020-04-29 14:24:40 +02:00

build_ref_db.pyx

all commands (almost): cleaner DMS closing at the end

2020-04-12 17:31:58 +02:00

cat.pyx

all commands (almost): cleaner DMS closing at the end

2020-04-12 17:31:58 +02:00

clean_dms.pyx

clean_dms: now works with extension

2019-12-12 17:02:50 +01:00

clean.pyx

all commands (almost): cleaner DMS closing at the end

2020-04-12 17:31:58 +02:00

count.pyx

all commands (almost): cleaner DMS closing at the end

2020-04-12 17:31:58 +02:00

ecopcr.pyx

ecopcr: added warnings and check of primer length (related to #75)

2020-04-05 18:40:56 +02:00

ecotag.pyx

ecotag: fixed a bug where all the full DMS path weren't properly sent to

2020-04-29 10:35:55 +02:00

export.pyx

export: fixed progress bar bug

2020-04-17 15:09:10 +02:00

grep.pyx

all commands (almost): cleaner DMS closing at the end

2020-04-12 17:31:58 +02:00

head.pyx

all commands (almost): cleaner DMS closing at the end

2020-04-12 17:31:58 +02:00

history.pyx

all commands (almost): cleaner DMS closing at the end

2020-04-12 17:31:58 +02:00

import.pyx

obi import: fixed the import of old obitools files with premerged

2020-05-07 17:03:04 +02:00

less.pyx

all commands (almost): cleaner DMS closing at the end

2020-04-12 17:31:58 +02:00

ls.pyx

all commands (almost): cleaner DMS closing at the end

2020-04-12 17:31:58 +02:00

ngsfilter.pyx

ngsfilter: added warning about primer length in -h (#75)

2020-04-05 18:39:20 +02:00

sort.pyx

all commands (almost): cleaner DMS closing at the end

2020-04-12 17:31:58 +02:00

stats.pyx

obi stats: fixed error when printing bool keys

2020-04-12 17:12:04 +02:00

tail.pyx

all commands (almost): cleaner DMS closing at the end

2020-04-12 17:31:58 +02:00

test.pyx

all commands (almost): cleaner DMS closing at the end

2020-04-12 17:31:58 +02:00

uniq.pxd

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

uniq.pyx

Cleaner handling of reverse quality columns

2020-01-18 19:28:12 +01:00