MercierC 425fe25bd2 Made the OBITools3 more 'empty file friendly'

2021-03-15 16:25:41 +13:00

..

__init__.py

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

.gitignore

Cleaning first stage

2019-03-29 16:40:36 +01:00

addtaxids.pyx

New command: obi addtaxids to add NCBI taxids to sequences from their

2020-10-30 10:46:55 +01:00

align.pxd

better cfiles

2019-02-19 14:11:29 +01:00

align.pyx

Python: made all commands handle output to buffer object (e.g. stdout)

2020-07-24 16:09:48 +02:00

alignpairedend.pxd

Alignpairedend: added alignment using shifting with best kmer similarity

2019-01-21 17:30:46 +01:00

alignpairedend.pyx

Made the OBITools3 more 'empty file friendly'

2021-03-15 16:25:41 +13:00

annotate.pyx

Python: made all commands handle output to buffer object (e.g. stdout)

2020-07-24 16:09:48 +02:00

build_ref_db.pyx

Python: made all commands handle output to buffer object (e.g. stdout)

2020-07-24 16:09:48 +02:00

cat.pyx

Now handling dictionaries with one key

2021-03-10 16:50:30 +13:00

clean_dms.pyx

clean_dms: now works with extension

2019-12-12 17:02:50 +01:00

clean.pyx

Python: made all commands handle output to buffer object (e.g. stdout)

2020-07-24 16:09:48 +02:00

count.pyx

small help documentation improvement

2020-07-01 18:20:38 +02:00

ecopcr.pyx

Python: made all commands handle output to buffer object (e.g. stdout)

2020-07-24 16:09:48 +02:00

ecotag.pyx

ecotag: clarified similarity circle documentation

2020-09-29 17:57:29 +02:00

export.pyx

export: now automatically sorts dictionary keys alphabetically for

2020-07-31 16:43:35 +02:00

grep.pyx

grep: fixed --id-list option

2020-11-06 16:36:37 +01:00

head.pyx

Python: made all commands handle output to buffer object (e.g. stdout)

2020-07-24 16:09:48 +02:00

history.pyx

all commands (almost): cleaner DMS closing at the end

2020-04-12 17:31:58 +02:00

import.pyx

Now handling dictionaries with one key

2021-03-10 16:50:30 +13:00

less.pyx

all commands (almost): cleaner DMS closing at the end

2020-04-12 17:31:58 +02:00

ls.pyx

obi ls: now done in C (preparing things for R packages to read DMS) and

2020-09-29 17:51:39 +02:00

ngsfilter.pyx

Made the OBITools3 more 'empty file friendly'

2021-03-15 16:25:41 +13:00

sort.pyx

Python: made all commands handle output to buffer object (e.g. stdout)

2020-07-24 16:09:48 +02:00

stats.pyx

Python: made all commands handle output to buffer object (e.g. stdout)

2020-07-24 16:09:48 +02:00

tail.pyx

Python: made all commands handle output to buffer object (e.g. stdout)

2020-07-24 16:09:48 +02:00

test.pyx

obi test: fixed bug introduced in ad1fd3c3

2021-03-11 16:31:31 +13:00

uniq.pxd

obi uniq: fixed the remerging of already merged informations, and

2020-05-07 17:05:54 +02:00

uniq.pyx

Now handling dictionaries with one key

2021-03-10 16:50:30 +13:00