30 lines
588 B
Cython
30 lines
588 B
Cython
cimport cython
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cdef class FastaFormat:
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def __init__(self, list tags=[], bint printNAKeys=False):
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self.headerFormater = HeaderFormat(True,
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tags,
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printNAKeys)
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@cython.boundscheck(False)
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def __call__(self, dict data):
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cdef bytes brawseq = data['sequence']
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cdef size_t lseq = len(brawseq)
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cdef size_t k=0
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cdef list lines = []
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for k in range(0,lseq,60):
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lines.append(brawseq[k:(k+60)])
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brawseq = b'\n'.join(lines)
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return "%s\n%s" % (self.headerFormater(data),bytes2str(brawseq))
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