Celine Mercier b9b4cec5b5 import: now can import SILVA fasta files

2020-10-30 10:43:04 +01:00

..

__init__.py

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

.gitignore

Cleaning first stage

2019-03-29 16:40:36 +01:00

align.pxd

better cfiles

2019-02-19 14:11:29 +01:00

align.pyx

Python: made all commands handle output to buffer object (e.g. stdout)

2020-07-24 16:09:48 +02:00

alignpairedend.pxd

Alignpairedend: added alignment using shifting with best kmer similarity

2019-01-21 17:30:46 +01:00

alignpairedend.pyx

Python: made all commands handle output to buffer object (e.g. stdout)

2020-07-24 16:09:48 +02:00

annotate.pyx

Python: made all commands handle output to buffer object (e.g. stdout)

2020-07-24 16:09:48 +02:00

build_ref_db.pyx

Python: made all commands handle output to buffer object (e.g. stdout)

2020-07-24 16:09:48 +02:00

cat.pyx

obi cat: fixed open file descriptor leak and switch to version 3.0.0b34

2020-08-28 10:41:22 +02:00

clean_dms.pyx

clean_dms: now works with extension

2019-12-12 17:02:50 +01:00

clean.pyx

Python: made all commands handle output to buffer object (e.g. stdout)

2020-07-24 16:09:48 +02:00

count.pyx

small help documentation improvement

2020-07-01 18:20:38 +02:00

ecopcr.pyx

Python: made all commands handle output to buffer object (e.g. stdout)

2020-07-24 16:09:48 +02:00

ecotag.pyx

ecotag: clarified similarity circle documentation

2020-09-29 17:57:29 +02:00

export.pyx

export: now automatically sorts dictionary keys alphabetically for

2020-07-31 16:43:35 +02:00

grep.pyx

Python: made all commands handle output to buffer object (e.g. stdout)

2020-07-24 16:09:48 +02:00

head.pyx

Python: made all commands handle output to buffer object (e.g. stdout)

2020-07-24 16:09:48 +02:00

history.pyx

all commands (almost): cleaner DMS closing at the end

2020-04-12 17:31:58 +02:00

import.pyx

import: now can import SILVA fasta files

2020-10-30 10:43:04 +01:00

less.pyx

all commands (almost): cleaner DMS closing at the end

2020-04-12 17:31:58 +02:00

ls.pyx

obi ls: now done in C (preparing things for R packages to read DMS) and

2020-09-29 17:51:39 +02:00

ngsfilter.pyx

Python: made all commands handle output to buffer object (e.g. stdout)

2020-07-24 16:09:48 +02:00

sort.pyx

Python: made all commands handle output to buffer object (e.g. stdout)

2020-07-24 16:09:48 +02:00

stats.pyx

Python: made all commands handle output to buffer object (e.g. stdout)

2020-07-24 16:09:48 +02:00

tail.pyx

Python: made all commands handle output to buffer object (e.g. stdout)

2020-07-24 16:09:48 +02:00

test.pyx

Python: added "date created" information in view representation

2020-07-27 17:38:45 +02:00

uniq.pxd

obi uniq: fixed the remerging of already merged informations, and

2020-05-07 17:05:54 +02:00

uniq.pyx

uniq: added a check to make sure that there is more than one element for

2020-07-30 16:14:37 +02:00